| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is sam [H]
Identifier: 110679154
GI number: 110679154
Start: 1784020
End: 1784913
Strand: Direct
Name: sam [H]
Synonym: RD1_1864
Alternate gene names: 110679154
Gene position: 1784020-1784913 (Clockwise)
Preceding gene: 110679153
Following gene: 110679158
Centisome position: 43.16
GC content: 61.86
Gene sequence:
>894_bases ATGACAGGCACGGATAAACCCGGTCTCGCCATCGGCTTGCGCATCCTGTCGGGTGTTCTCTTTGCCGGCATGCTGGTCTG CGTCAAAGCTGTGAGCGCGGATGTGCCATTGGGCGAAATCGTCTTTTACCGCTCCGCCTTTGCGCTGATCCCGCTGGTGG TTTTCCTCTGGATCAGGCGGGAATTTCCGGGCGGTCTGGCAACCAAACGCCCCGTCGCCCATCTGTTACGGGCGAGTTTC GGGGCTTTGGCGATGTTTGCTTCCTTTGCGGCGATTGCGCGGCTGAATGTGGCTGAGGCAACCCTGATTGCGCAGCTTTC GCCGATCCTGATGGCGCTTGCGGCGGTTGTTTTCCTGTCGGAACGGCTGACGCGCTGGCGGGTTGGAGGCCTTGCGCTCG GGTTTGCCGGGGTCGTCATTCTGGTCTGGCCGGAGCTTGGCGGGCGCGCACCGGACGCGGCCCGTCTTGCTGGTTTTGCA ATCGGCTTGCTGGGGGCGGCGCTTACGGCATTTGCGCTCATCATGGTGCGCAGCCTGAACCGCACCGAAAGCCCCGGTGC CATCGCGTTCTATTTTGCGCTGGCGTCCATGATAGGGGGGCTGTTGACGCTGCCCTGGGGTTGGATCACGCCCGACATCT GGACGCTGACGCTGTTGATCGGCGCTGGCCTATTCGGTGGTTTTGCCCATATCGCCATGACGCTTGCGTTCCGCTACGCC GAAGCCAGCCGGATCGCGCCGTTTGAATATGTGGCGCTTCTGTGGCCTGTGCTCGCGGATCTGCTGATCTTCAATGTTGC GCTTTCCACCAGTTTTCTGTTTGCACTGCCGCTTGTTCTGGGCGGTGCAGCGCTTGCAGCCGCCGAAAAGGGGCCGCGAA CCCGAAAGGCATGA
Upstream 100 bases:
>100_bases AGATGATCTGGCCGGGGCTTGCGGTCGTTTTCTGCGTCCTTGCGATCAACCTTGCCGGGGACGTGTTGCGCGACGCCTTG ACCGAAGGGGATCACAGGAA
Downstream 100 bases:
>100_bases GAATTGGACCAGATTGGTCCTGCTCCAGCCTCTCAGAAGGGATAGCGTGGTCCGGTACAAAGCTGTAGCGTCATGCGAAA AACCTCAATCACGCAATGCT
Product: integral membrane protein, putative
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 297; Mature: 296
Protein sequence:
>297_residues MTGTDKPGLAIGLRILSGVLFAGMLVCVKAVSADVPLGEIVFYRSAFALIPLVVFLWIRREFPGGLATKRPVAHLLRASF GALAMFASFAAIARLNVAEATLIAQLSPILMALAAVVFLSERLTRWRVGGLALGFAGVVILVWPELGGRAPDAARLAGFA IGLLGAALTAFALIMVRSLNRTESPGAIAFYFALASMIGGLLTLPWGWITPDIWTLTLLIGAGLFGGFAHIAMTLAFRYA EASRIAPFEYVALLWPVLADLLIFNVALSTSFLFALPLVLGGAALAAAEKGPRTRKA
Sequences:
>Translated_297_residues MTGTDKPGLAIGLRILSGVLFAGMLVCVKAVSADVPLGEIVFYRSAFALIPLVVFLWIRREFPGGLATKRPVAHLLRASF GALAMFASFAAIARLNVAEATLIAQLSPILMALAAVVFLSERLTRWRVGGLALGFAGVVILVWPELGGRAPDAARLAGFA IGLLGAALTAFALIMVRSLNRTESPGAIAFYFALASMIGGLLTLPWGWITPDIWTLTLLIGAGLFGGFAHIAMTLAFRYA EASRIAPFEYVALLWPVLADLLIFNVALSTSFLFALPLVLGGAALAAAEKGPRTRKA >Mature_296_residues TGTDKPGLAIGLRILSGVLFAGMLVCVKAVSADVPLGEIVFYRSAFALIPLVVFLWIRREFPGGLATKRPVAHLLRASFG ALAMFASFAAIARLNVAEATLIAQLSPILMALAAVVFLSERLTRWRVGGLALGFAGVVILVWPELGGRAPDAARLAGFAI GLLGAALTAFALIMVRSLNRTESPGAIAFYFALASMIGGLLTLPWGWITPDIWTLTLLIGAGLFGGFAHIAMTLAFRYAE ASRIAPFEYVALLWPVLADLLIFNVALSTSFLFALPLVLGGAALAAAEKGPRTRKA
Specific function: Transports S-adenosylmethionine [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the drug/metabolite transporter (DMT) superfamily. 10 TMS drug/metabolite exporter (TC 2.A.7.3) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000620 [H]
Pfam domain/function: PF00892 DUF6 [H]
EC number: NA
Molecular weight: Translated: 31337; Mature: 31206
Theoretical pI: Translated: 10.97; Mature: 10.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTGTDKPGLAIGLRILSGVLFAGMLVCVKAVSADVPLGEIVFYRSAFALIPLVVFLWIRR CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH EFPGGLATKRPVAHLLRASFGALAMFASFAAIARLNVAEATLIAQLSPILMALAAVVFLS HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ERLTRWRVGGLALGFAGVVILVWPELGGRAPDAARLAGFAIGLLGAALTAFALIMVRSLN HHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC RTESPGAIAFYFALASMIGGLLTLPWGWITPDIWTLTLLIGAGLFGGFAHIAMTLAFRYA CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EASRIAPFEYVALLWPVLADLLIFNVALSTSFLFALPLVLGGAALAAAEKGPRTRKA HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure TGTDKPGLAIGLRILSGVLFAGMLVCVKAVSADVPLGEIVFYRSAFALIPLVVFLWIRR CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH EFPGGLATKRPVAHLLRASFGALAMFASFAAIARLNVAEATLIAQLSPILMALAAVVFLS HCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ERLTRWRVGGLALGFAGVVILVWPELGGRAPDAARLAGFAIGLLGAALTAFALIMVRSLN HHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC RTESPGAIAFYFALASMIGGLLTLPWGWITPDIWTLTLLIGAGLFGGFAHIAMTLAFRYA CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EASRIAPFEYVALLWPVLADLLIFNVALSTSFLFALPLVLGGAALAAAEKGPRTRKA HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA