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The map label for this gene is ydeB [H]

Identifier: 110679120

GI number: 110679120

Start: 1750054

End: 1750566

Strand: Direct

Name: ydeB [H]

Synonym: RD1_1825

Alternate gene names: 110679120

Gene position: 1750054-1750566 (Clockwise)

Preceding gene: 110679119

Following gene: 110679122

Centisome position: 42.34

GC content: 57.89

Gene sequence:

>513_bases
ATGACAAAATCGAAGAAACTTGATTTCCGCCCCAACGAATTCGTCGTCTACCCGGCCCACGGTGTGGGCCAGATACTCTC
GATTGAAGAGCAGGAAGTCGCGGGTCTCTCCCTTGAGCTTTTTGTGATTTCTTTTGAGAAAGACAAGATGACGCTGCGGG
TGCCGACGCATAAGGCGACGGAAATCGGAATGCGCGCATTGAGCAGCCCCGATGTAATCTCGCATGCGATGCGGACGCTC
AAGGGCAAGGCCAAGGTCAAACGCGCCATGTGGTCGCGCCGCGCACAGGAATATGAGCAAAAGATCAATTCCGGTGATCT
GATCGCGATTGCCGAAGTGGTGCGCGATTTGCACCGCACCGACGATCAGCGCGAGCAGAGCTATTCCGAGCGCCAGCTTT
ACGAAGCAGCGCTTGAGCGTCTGACCCGTGAAGTCGCGGCCGTCAGCGGTGGCGACGAGCTTGCCGCCTCCAAACAGGTC
GGTGACGTTCTGGAAAGCCGCGTCGCCGCCTGA

Upstream 100 bases:

>100_bases
CGGCATGAACGCACTGGATCGCGCAGCATTGCTGCTTCGCCTCTTGTGTGGTTTTGACTGTCGAAAGTAGGGGCAAGCGC
CGTCAGCTGAGGAATAGTGA

Downstream 100 bases:

>100_bases
ACGCAGCCAAGGCTACTGTTGAAAACCGCGCCCGTGCCGGCGCGGTTTTTTCATGGGGTGGCCACAATGAAGGTGAGCAA
GACCAGCAATTCGGTGATCA

Product: CarD family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 170; Mature: 169

Protein sequence:

>170_residues
MTKSKKLDFRPNEFVVYPAHGVGQILSIEEQEVAGLSLELFVISFEKDKMTLRVPTHKATEIGMRALSSPDVISHAMRTL
KGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRTDDQREQSYSERQLYEAALERLTREVAAVSGGDELAASKQV
GDVLESRVAA

Sequences:

>Translated_170_residues
MTKSKKLDFRPNEFVVYPAHGVGQILSIEEQEVAGLSLELFVISFEKDKMTLRVPTHKATEIGMRALSSPDVISHAMRTL
KGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRTDDQREQSYSERQLYEAALERLTREVAAVSGGDELAASKQV
GDVLESRVAA
>Mature_169_residues
TKSKKLDFRPNEFVVYPAHGVGQILSIEEQEVAGLSLELFVISFEKDKMTLRVPTHKATEIGMRALSSPDVISHAMRTLK
GKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRTDDQREQSYSERQLYEAALERLTREVAAVSGGDELAASKQVG
DVLESRVAA

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 19057; Mature: 18926

Theoretical pI: Translated: 7.84; Mature: 7.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKSKKLDFRPNEFVVYPAHGVGQILSIEEQEVAGLSLELFVISFEKDKMTLRVPTHKAT
CCCCCCCCCCCCEEEEECCCCCCHHHCCCHHHHCCCEEEEEEEEECCCCEEEEECCCHHH
EIGMRALSSPDVISHAMRTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRT
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
DDQREQSYSERQLYEAALERLTREVAAVSGGDELAASKQVGDVLESRVAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TKSKKLDFRPNEFVVYPAHGVGQILSIEEQEVAGLSLELFVISFEKDKMTLRVPTHKAT
CCCCCCCCCCCEEEEECCCCCCHHHCCCHHHHCCCEEEEEEEEECCCCEEEEECCCHHH
EIGMRALSSPDVISHAMRTLKGKAKVKRAMWSRRAQEYEQKINSGDLIAIAEVVRDLHRT
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCC
DDQREQSYSERQLYEAALERLTREVAAVSGGDELAASKQVGDVLESRVAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]