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The map label for this gene is ygaU [C]

Identifier: 110679072

GI number: 110679072

Start: 1698685

End: 1699971

Strand: Direct

Name: ygaU [C]

Synonym: RD1_1774

Alternate gene names: 110679072

Gene position: 1698685-1699971 (Clockwise)

Preceding gene: 110679070

Following gene: 110679073

Centisome position: 41.1

GC content: 67.13

Gene sequence:

>1287_bases
ATGAAAGACAATGGGTCTGCCAACCCATCCCAGAGCACCGGTCTGTTGACCGCGGGCCTCGTGATTGCGGGGCTGATCGC
GGCGGCGGTATTTTTGTCGATGCGCGATTCCGGGCGGCTGAGCGAAGAGGCCGTGGCGGTTCTGGAATCCTCTGGCGGGG
CGGGGGGCAATCAGGTCGTCACGCAGCAGATCGAAGCCGATGATGCGCCGCAGGAGATACCACAGGACGCGCCGCAAGAC
GCGCCCGTTGCGCAAACAGAGCCCGAGGAGGCCGCGCCCACGATTGACGAGGTGCGGGTAGACACGGGCGGAACGATGGT
GATTGCCGGGCGCGCAGGGCCGGGCGCGCAGGTCGATGTGCTGCTCGACGGTGAGGTCGTCACCACAGCGCAGGCCGATT
CAACCGGTTCATTCGCGGCGGTGAGTTCGGTAACGGCGGATGAGGGCGCACGCAGCCTGACCCTGCGCAGCGGTGAAGGG
GACGAAGCGGTCGCGTCCGTGGATGAGATTATCCTCGCCCCGGTCACGCCGCTGGCGGACCTGCCGCCACCGGACGCAGC
GCCAGACCAGCCCGAGACTGCGACCGCGCCAACGGCTATGGTGCAGGATGCGGGCACGGGTGCGGAGCCGGCGCAGGACG
AAGAACCTGCGCAAGCGGTGCAGGAGATTGCGGCGGTGGATCCCCCCGCGCCTGATCAAAGCGATGTCGCGCCCCCGGCG
GAGGCGGAGGCCGCGCCCACTGCCGAGGGGACGGAAGATCCCGCGATCGCCGTATTGCGTTCGGATGCGCAAGGGGTGTC
GCGGGTGCAGACGGCCCCGGCGTCGCGGATCATGCTCGACACGATCAGCTATTCGGATGCGGGCGACGTGCAGCTTGGCG
GGCGCGCGGGCACCGGCGCGGTCGAAGTGCGCGCCTATCTCGACAACCGGGCGGTGGCCCGTATGAGGGTGGAGCCCGAC
GGGCAATGGCGCGGTGTCATCGAAGATGTGGCAGCGGGTATCTACCGGTTGCGTGTGGATGCGCTGGGGCAGGATGGCGC
GGTGACGAGCCGTCTGGAAACACCGTTCAAACGCGAGGCACCGGCTGTGCTGGAGGCGGCCACGCAGGCAGCCACCGGGC
AGATACAGGCAATTACCGTGCAGGCGGGCGACACGCTCTGGGCCATTGCGCGTGAGCGATATGGGGAGGGCTTGCTTTAT
GTGCAGGTCTTTGAGGCCAATCGCAGTGAAATACGCGACCCCGATCTGATCTATCCGGGACAGGTTTTCGACCTTCCCGC
AGACTAA

Upstream 100 bases:

>100_bases
TTATGACTTCATTCGTTTTGACCAGTGATAGGGCAGTTGCTATGTAGGCTCAATGTCTGCATCGCATCCGAGCGCGTGAA
CCCGGAAAGTTGAGATCAAA

Downstream 100 bases:

>100_bases
ATCGGGCGGCACGCTGGCCAAGCCGGGGCCTGTGTCTTAGGTATCTGCTTCCAAGACGTGACAGGACCCTATATGCCCAG
TGATACCGCCGCCGATCAGA

Product: lysM domain-containing protein

Products: NA

Alternate protein names: LysM Domain-Containing Protein

Number of amino acids: Translated: 428; Mature: 428

Protein sequence:

>428_residues
MKDNGSANPSQSTGLLTAGLVIAGLIAAAVFLSMRDSGRLSEEAVAVLESSGGAGGNQVVTQQIEADDAPQEIPQDAPQD
APVAQTEPEEAAPTIDEVRVDTGGTMVIAGRAGPGAQVDVLLDGEVVTTAQADSTGSFAAVSSVTADEGARSLTLRSGEG
DEAVASVDEIILAPVTPLADLPPPDAAPDQPETATAPTAMVQDAGTGAEPAQDEEPAQAVQEIAAVDPPAPDQSDVAPPA
EAEAAPTAEGTEDPAIAVLRSDAQGVSRVQTAPASRIMLDTISYSDAGDVQLGGRAGTGAVEVRAYLDNRAVARMRVEPD
GQWRGVIEDVAAGIYRLRVDALGQDGAVTSRLETPFKREAPAVLEAATQAATGQIQAITVQAGDTLWAIARERYGEGLLY
VQVFEANRSEIRDPDLIYPGQVFDLPAD

Sequences:

>Translated_428_residues
MKDNGSANPSQSTGLLTAGLVIAGLIAAAVFLSMRDSGRLSEEAVAVLESSGGAGGNQVVTQQIEADDAPQEIPQDAPQD
APVAQTEPEEAAPTIDEVRVDTGGTMVIAGRAGPGAQVDVLLDGEVVTTAQADSTGSFAAVSSVTADEGARSLTLRSGEG
DEAVASVDEIILAPVTPLADLPPPDAAPDQPETATAPTAMVQDAGTGAEPAQDEEPAQAVQEIAAVDPPAPDQSDVAPPA
EAEAAPTAEGTEDPAIAVLRSDAQGVSRVQTAPASRIMLDTISYSDAGDVQLGGRAGTGAVEVRAYLDNRAVARMRVEPD
GQWRGVIEDVAAGIYRLRVDALGQDGAVTSRLETPFKREAPAVLEAATQAATGQIQAITVQAGDTLWAIARERYGEGLLY
VQVFEANRSEIRDPDLIYPGQVFDLPAD
>Mature_428_residues
MKDNGSANPSQSTGLLTAGLVIAGLIAAAVFLSMRDSGRLSEEAVAVLESSGGAGGNQVVTQQIEADDAPQEIPQDAPQD
APVAQTEPEEAAPTIDEVRVDTGGTMVIAGRAGPGAQVDVLLDGEVVTTAQADSTGSFAAVSSVTADEGARSLTLRSGEG
DEAVASVDEIILAPVTPLADLPPPDAAPDQPETATAPTAMVQDAGTGAEPAQDEEPAQAVQEIAAVDPPAPDQSDVAPPA
EAEAAPTAEGTEDPAIAVLRSDAQGVSRVQTAPASRIMLDTISYSDAGDVQLGGRAGTGAVEVRAYLDNRAVARMRVEPD
GQWRGVIEDVAAGIYRLRVDALGQDGAVTSRLETPFKREAPAVLEAATQAATGQIQAITVQAGDTLWAIARERYGEGLLY
VQVFEANRSEIRDPDLIYPGQVFDLPAD

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43902; Mature: 43902

Theoretical pI: Translated: 3.75; Mature: 3.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDNGSANPSQSTGLLTAGLVIAGLIAAAVFLSMRDSGRLSEEAVAVLESSGGAGGNQVV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHE
TQQIEADDAPQEIPQDAPQDAPVAQTEPEEAAPTIDEVRVDTGGTMVIAGRAGPGAQVDV
EEECCCCCCHHHCCCCCCCCCCCCCCCCHHHCCCHHHEEECCCCEEEEEECCCCCCEEEE
LLDGEVVTTAQADSTGSFAAVSSVTADEGARSLTLRSGEGDEAVASVDEIILAPVTPLAD
EECCCEEEEECCCCCCCCHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC
LPPPDAAPDQPETATAPTAMVQDAGTGAEPAQDEEPAQAVQEIAAVDPPAPDQSDVAPPA
CCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
EAEAAPTAEGTEDPAIAVLRSDAQGVSRVQTAPASRIMLDTISYSDAGDVQLGGRAGTGA
CCCCCCCCCCCCCCEEEEEECCCHHHHHHHHCCCCEEEEEEECCCCCCCEEECCCCCCCE
VEVRAYLDNRAVARMRVEPDGQWRGVIEDVAAGIYRLRVDALGQDGAVTSRLETPFKREA
EEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHEEEEEECCCCCCCCHHHHCCCHHHCC
PAVLEAATQAATGQIQAITVQAGDTLWAIARERYGEGLLYVQVFEANRSEIRDPDLIYPG
CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCEEEEEEEECCHHHCCCCCEECCC
QVFDLPAD
CEECCCCC
>Mature Secondary Structure
MKDNGSANPSQSTGLLTAGLVIAGLIAAAVFLSMRDSGRLSEEAVAVLESSGGAGGNQVV
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCHHE
TQQIEADDAPQEIPQDAPQDAPVAQTEPEEAAPTIDEVRVDTGGTMVIAGRAGPGAQVDV
EEECCCCCCHHHCCCCCCCCCCCCCCCCHHHCCCHHHEEECCCCEEEEEECCCCCCEEEE
LLDGEVVTTAQADSTGSFAAVSSVTADEGARSLTLRSGEGDEAVASVDEIILAPVTPLAD
EECCCEEEEECCCCCCCCHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCC
LPPPDAAPDQPETATAPTAMVQDAGTGAEPAQDEEPAQAVQEIAAVDPPAPDQSDVAPPA
CCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
EAEAAPTAEGTEDPAIAVLRSDAQGVSRVQTAPASRIMLDTISYSDAGDVQLGGRAGTGA
CCCCCCCCCCCCCCEEEEEECCCHHHHHHHHCCCCEEEEEEECCCCCCCEEECCCCCCCE
VEVRAYLDNRAVARMRVEPDGQWRGVIEDVAAGIYRLRVDALGQDGAVTSRLETPFKREA
EEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHEEEEEECCCCCCCCHHHHCCCHHHCC
PAVLEAATQAATGQIQAITVQAGDTLWAIARERYGEGLLYVQVFEANRSEIRDPDLIYPG
CHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCEEEEEEEECCHHHCCCCCEECCC
QVFDLPAD
CEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA