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The map label for this gene is sodB [H]

Identifier: 110679070

GI number: 110679070

Start: 1697214

End: 1697813

Strand: Direct

Name: sodB [H]

Synonym: RD1_1772

Alternate gene names: 110679070

Gene position: 1697214-1697813 (Clockwise)

Preceding gene: 110679069

Following gene: 110679072

Centisome position: 41.06

GC content: 56.0

Gene sequence:

>600_bases
ATGGCTTTTGAACTTCCTGATCTTCCCTACGCGCATGATGCTCTGGCGGGCAAAGGCATGTCCGCCGAAACGCTGGAATA
CCACCACGACCTGCACCACAACGCCTATGTGACCAATGGCAACAAGGCGATTGAGGGCACCGAATGGGCGGGCAAGTCCA
TGGAAGACATCATCACGGGCACCTATGATGCCTCTGCCGTGGCGCAGAATGGCATCTTCAACAACATCAGCCAGTTGTGG
AACCACAACCAGTTCTGGGAAATGATGGGTCCGGGTGAGAGCAAGATGCCCGGAGAGCTGGAAAAAGCGCTGACCGAGAA
TTTCGGGTCTGTCGATGCGTTCAAGGAACAGTTTTCCGCCGCCGGTGCGGGTCAGTTCGGGTCAGGCTGGTGCTGGTTGG
TGAAAAACCCTGACGGCTCGCTGGCGGTGACCAAGACGGAAAACGGCGTGAACCCGCTGTGTTTTGGCCAGACGGCATTG
CTCGGCTGCGATGTGTGGGAGCATTCGTACTACATTGATTTCCGCAACAAACGCCCTGCCTACCTGACAAACTTCCTCGA
CAACCTCGTCAATTGGGAAAACGTCGCATCGCGCATGTAA

Upstream 100 bases:

>100_bases
TACGCTTGGAACTTTTTGCGCGCCCTGATACTTGAACTGCGAGCGTGTAGCGCTTCATTGCACTACACACCGCATTGAAT
AACCAAGAGGGGGCCCGACA

Downstream 100 bases:

>100_bases
CCGCGTGACAGGTTAAGTTGTTGCAGCCCCGTGTCATCGTTGATGGCGCGGGGTTTTTCGTAGCGATTGAATGCCCGGAG
CCCCCTAAAGTCTCATGCGA

Product: superoxide dismutase (Fe)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MAFELPDLPYAHDALAGKGMSAETLEYHHDLHHNAYVTNGNKAIEGTEWAGKSMEDIITGTYDASAVAQNGIFNNISQLW
NHNQFWEMMGPGESKMPGELEKALTENFGSVDAFKEQFSAAGAGQFGSGWCWLVKNPDGSLAVTKTENGVNPLCFGQTAL
LGCDVWEHSYYIDFRNKRPAYLTNFLDNLVNWENVASRM

Sequences:

>Translated_199_residues
MAFELPDLPYAHDALAGKGMSAETLEYHHDLHHNAYVTNGNKAIEGTEWAGKSMEDIITGTYDASAVAQNGIFNNISQLW
NHNQFWEMMGPGESKMPGELEKALTENFGSVDAFKEQFSAAGAGQFGSGWCWLVKNPDGSLAVTKTENGVNPLCFGQTAL
LGCDVWEHSYYIDFRNKRPAYLTNFLDNLVNWENVASRM
>Mature_198_residues
AFELPDLPYAHDALAGKGMSAETLEYHHDLHHNAYVTNGNKAIEGTEWAGKSMEDIITGTYDASAVAQNGIFNNISQLWN
HNQFWEMMGPGESKMPGELEKALTENFGSVDAFKEQFSAAGAGQFGSGWCWLVKNPDGSLAVTKTENGVNPLCFGQTALL
GCDVWEHSYYIDFRNKRPAYLTNFLDNLVNWENVASRM

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=198, Percent_Identity=40.4040404040404, Blast_Score=122, Evalue=1e-28,
Organism=Homo sapiens, GI67782305, Length=198, Percent_Identity=40.4040404040404, Blast_Score=122, Evalue=1e-28,
Organism=Homo sapiens, GI67782309, Length=197, Percent_Identity=35.0253807106599, Blast_Score=100, Evalue=2e-21,
Organism=Escherichia coli, GI1787946, Length=200, Percent_Identity=50.5, Blast_Score=195, Evalue=2e-51,
Organism=Escherichia coli, GI1790342, Length=206, Percent_Identity=40.7766990291262, Blast_Score=149, Evalue=1e-37,
Organism=Caenorhabditis elegans, GI17506561, Length=196, Percent_Identity=34.6938775510204, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17569479, Length=194, Percent_Identity=30.9278350515464, Blast_Score=92, Evalue=1e-19,
Organism=Saccharomyces cerevisiae, GI6321796, Length=210, Percent_Identity=31.9047619047619, Blast_Score=84, Evalue=1e-17,
Organism=Drosophila melanogaster, GI17136812, Length=198, Percent_Identity=34.3434343434343, Blast_Score=105, Evalue=3e-23,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22078; Mature: 21946

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFELPDLPYAHDALAGKGMSAETLEYHHDLHHNAYVTNGNKAIEGTEWAGKSMEDIITG
CCCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCEECCCCCCCCCHHHHHCC
TYDASAVAQNGIFNNISQLWNHNQFWEMMGPGESKMPGELEKALTENFGSVDAFKEQFSA
CCCHHHHHHCCHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
AGAGQFGSGWCWLVKNPDGSLAVTKTENGVNPLCFGQTALLGCDVWEHSYYIDFRNKRPA
CCCCCCCCCEEEEEECCCCCEEEEECCCCCCCEEECCHHHHCCEEECCEEEEEECCCCCH
YLTNFLDNLVNWENVASRM
HHHHHHHHHCCHHHHHHCC
>Mature Secondary Structure 
AFELPDLPYAHDALAGKGMSAETLEYHHDLHHNAYVTNGNKAIEGTEWAGKSMEDIITG
CCCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCEEEECCCCEECCCCCCCCCHHHHHCC
TYDASAVAQNGIFNNISQLWNHNQFWEMMGPGESKMPGELEKALTENFGSVDAFKEQFSA
CCCHHHHHHCCHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHH
AGAGQFGSGWCWLVKNPDGSLAVTKTENGVNPLCFGQTALLGCDVWEHSYYIDFRNKRPA
CCCCCCCCCEEEEEECCCCCEEEEECCCCCCCEEECCHHHHCCEEECCEEEEEECCCCCH
YLTNFLDNLVNWENVASRM
HHHHHHHHHCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9765573 [H]