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The map label for this gene is yqgF [C]

Identifier: 110679064

GI number: 110679064

Start: 1693511

End: 1694002

Strand: Reverse

Name: yqgF [C]

Synonym: RD1_1766

Alternate gene names: 110679064

Gene position: 1694002-1693511 (Counterclockwise)

Preceding gene: 110679065

Following gene: 110679063

Centisome position: 40.99

GC content: 63.82

Gene sequence:

>492_bases
ATGATCCTTGAAGACACCGCTGACTTTCTCGCGGCACTTCCCTCCATGCGCAGCCTCATGGGCCTTGATCTGGGCACCCA
GACCATCGGTGTTGCCGTCAGCGACACGTTCCTGTCCGTCGCCACGCCGCTGGAAACCGTCAAACGGCGCAAGTTCACGC
TGGACGCCGCACGTCTGAGCGACATCGTGGCACAACGGCGGCTCGGCGGGCTGGTGCTGGGCCTGCCGCGCAACATGGAC
GGCTCCGAAGGGCCGCGCTGCCAGTCGACCCGCGCCTTTGCCCGCAATCTGGACAAATCCATCGGGTCGGACCTGCCCAT
CACGTTCTGGGATGAGCGCCTGTCCACCGTCGCCGCCGAACGCGCGCTCCTTGAGGCGGATACGTCCCGAAAACGTCGCG
CAGAGGTCATTGACCACGTTGCCGCAGCCTATATCCTGCAAGGCGCGCTGGATCGCATCCGCGTAATTCGAGCAGAACAG
GACCAAGAATGA

Upstream 100 bases:

>100_bases
CGGCGCGCAGCGTCTATGAAAACGCCATTCAGGCCTTTGCCGACGACACCCGCGCGCTCGATCTGCTGCTGCGCGCCGGA
CAACGGGCGCAAGTGGCCGA

Downstream 100 bases:

>100_bases
GTGACATCTGGAAGCGGGACGAAGTCGAAAGCCCCTGCGTCAAAATCTGTGTGATCCACCCCGAGGCACGCCTGTGCACC
GGCTGCCTGCGCTCCATCGA

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MILEDTADFLAALPSMRSLMGLDLGTQTIGVAVSDTFLSVATPLETVKRRKFTLDAARLSDIVAQRRLGGLVLGLPRNMD
GSEGPRCQSTRAFARNLDKSIGSDLPITFWDERLSTVAAERALLEADTSRKRRAEVIDHVAAAYILQGALDRIRVIRAEQ
DQE

Sequences:

>Translated_163_residues
MILEDTADFLAALPSMRSLMGLDLGTQTIGVAVSDTFLSVATPLETVKRRKFTLDAARLSDIVAQRRLGGLVLGLPRNMD
GSEGPRCQSTRAFARNLDKSIGSDLPITFWDERLSTVAAERALLEADTSRKRRAEVIDHVAAAYILQGALDRIRVIRAEQ
DQE
>Mature_163_residues
MILEDTADFLAALPSMRSLMGLDLGTQTIGVAVSDTFLSVATPLETVKRRKFTLDAARLSDIVAQRRLGGLVLGLPRNMD
GSEGPRCQSTRAFARNLDKSIGSDLPITFWDERLSTVAAERALLEADTSRKRRAEVIDHVAAAYILQGALDRIRVIRAEQ
DQE

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=135, Percent_Identity=31.8518518518519, Blast_Score=72, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_ROSDO (Q169F8)

Other databases:

- EMBL:   CP000362
- RefSeq:   YP_682071.1
- ProteinModelPortal:   Q169F8
- SMR:   Q169F8
- STRING:   Q169F8
- GeneID:   4196940
- GenomeReviews:   CP000362_GR
- KEGG:   rde:RD1_1766
- NMPDR:   fig|375451.6.peg.1652
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   VLILQNY
- PhylomeDB:   Q169F8
- ProtClustDB:   PRK00109
- BioCyc:   RDEN375451:RD1_1766-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 17897; Mature: 17897

Theoretical pI: Translated: 5.98; Mature: 5.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILEDTADFLAALPSMRSLMGLDLGTQTIGVAVSDTFLSVATPLETVKRRKFTLDAARLS
CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIVAQRRLGGLVLGLPRNMDGSEGPRCQSTRAFARNLDKSIGSDLPITFWDERLSTVAAE
HHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHH
RALLEADTSRKRRAEVIDHVAAAYILQGALDRIRVIRAEQDQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MILEDTADFLAALPSMRSLMGLDLGTQTIGVAVSDTFLSVATPLETVKRRKFTLDAARLS
CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DIVAQRRLGGLVLGLPRNMDGSEGPRCQSTRAFARNLDKSIGSDLPITFWDERLSTVAAE
HHHHHHHHCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHH
RALLEADTSRKRRAEVIDHVAAAYILQGALDRIRVIRAEQDQE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA