| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is 110679063
Identifier: 110679063
GI number: 110679063
Start: 1693287
End: 1693514
Strand: Reverse
Name: 110679063
Synonym: RD1_1765
Alternate gene names: NA
Gene position: 1693514-1693287 (Counterclockwise)
Preceding gene: 110679064
Following gene: 110679062
Centisome position: 40.97
GC content: 64.91
Gene sequence:
>228_bases ATGAGTGACATCTGGAAGCGGGACGAAGTCGAAAGCCCCTGCGTCAAAATCTGTGTGATCCACCCCGAGGCACGCCTGTG CACCGGCTGCCTGCGCTCCATCGAGGAGATCACGATGTGGTCCAAACTCTCCCCCGACGCGCGGCGCATGGTGATGGACG AATTGCCAGGCAGGCAAGGGCTGCTCAGCAGACGTCGCGGCGGACGGGCCGCACGGCTGGCCCGCTGA
Upstream 100 bases:
>100_bases GAAAACGTCGCGCAGAGGTCATTGACCACGTTGCCGCAGCCTATATCCTGCAAGGCGCGCTGGATCGCATCCGCGTAATT CGAGCAGAACAGGACCAAGA
Downstream 100 bases:
>100_bases TCCACCGGCCGATGCCACGGCGTGATGTCGCGGCAGGCGCCCACCCCCCACGAAACAGATCACAACGACCTTGAATCACG CCACCCGCGCGCACATCTAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 75; Mature: 74
Protein sequence:
>75_residues MSDIWKRDEVESPCVKICVIHPEARLCTGCLRSIEEITMWSKLSPDARRMVMDELPGRQGLLSRRRGGRAARLAR
Sequences:
>Translated_75_residues MSDIWKRDEVESPCVKICVIHPEARLCTGCLRSIEEITMWSKLSPDARRMVMDELPGRQGLLSRRRGGRAARLAR >Mature_74_residues SDIWKRDEVESPCVKICVIHPEARLCTGCLRSIEEITMWSKLSPDARRMVMDELPGRQGLLSRRRGGRAARLAR
Specific function: Unknown
COG id: COG3313
COG function: function code R; Predicted Fe-S protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8595; Mature: 8464
Theoretical pI: Translated: 9.76; Mature: 9.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
5.3 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 10.7 %Cys+Met (Translated Protein) 5.4 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 9.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDIWKRDEVESPCVKICVIHPEARLCTGCLRSIEEITMWSKLSPDARRMVMDELPGRQG CCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCH LLSRRRGGRAARLAR HHHHHCCCCCCCCCC >Mature Secondary Structure SDIWKRDEVESPCVKICVIHPEARLCTGCLRSIEEITMWSKLSPDARRMVMDELPGRQG CCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCH LLSRRRGGRAARLAR HHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA