Click here to switch to the map view.

The map label for this gene is 110679059

Identifier: 110679059

GI number: 110679059

Start: 1689686

End: 1690168

Strand: Reverse

Name: 110679059

Synonym: RD1_1761

Alternate gene names: NA

Gene position: 1690168-1689686 (Counterclockwise)

Preceding gene: 110679060

Following gene: 110679056

Centisome position: 40.89

GC content: 61.9

Gene sequence:

>483_bases
ATGCCCTACGCTGCCCAAACCCCTGACGATTTGCTGCCCCGCTCGGAAATCCTAGGCATGTCGGGGCTGACCTTCATGCA
GCGCGTGCTCAAGGGAGAGATCGCGGGCGCCCCCATCGCGGCGACGCTCAACTTCAACCTGCTTGAGGTCGAAGAGGGCC
GCGTGCGCTTTTGCGGCACACCGGAATTCAGCGCCATGAACCCCAGCGGTGCCGTGCATGGCGGCTGGTATGGGGCCTTG
CTCGATTCGGCTCTGGGCTGCGCTGTGATGACCAAAGTGCCGCAGGGTTCGGTCTATACGACGCTGGAATACAAGGTGAA
CATTACCCGCGCCATTCCCCTCGGCATGTTCGTCCACTGCGATGCCTTGGTGGATCACGCAGGCCGCACCACAAGCGTGG
CCCATGGCGAAATTCGCGGTGCCGAGGATGGCAAGCTCTACGCCACCGGCTCAACGACCTGCATCATTATGAAACCGGGC
TAA

Upstream 100 bases:

>100_bases
TGTCACACAGGCCGTGACAGGCATTAAGGACGTCGCGTAAACCTTGAAGCCGCGCCCCAGCCGCTTAAGCTCCCCGCAAC
ACACTTTTGCGGAGAACCAG

Downstream 100 bases:

>100_bases
AGACGACGCGCCGAGTAGATGGACAGTATTTAAACACCTGCGCGTCGCAGTTGCCTTTGTTTTGGGGCGTTTTTTATAGC
GACGGTCGAATCCATGGTAA

Product: thioesterase family protein

Products: NA

Alternate protein names: Phenylacetic Acid Degradation-Related Protein; Thioesterase Family Protein; Thioesterase; Phenylacetic Acid Degradation-Like Protein; Aromatic Compounds Catabolic Protein; PaaI Thioesterase; Aromatic Compounds Degradation Protein PaaI; Domain 1 Protein; Protein Involved In Aromatic Compounds Catabolism; Orf_Bo

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MPYAAQTPDDLLPRSEILGMSGLTFMQRVLKGEIAGAPIAATLNFNLLEVEEGRVRFCGTPEFSAMNPSGAVHGGWYGAL
LDSALGCAVMTKVPQGSVYTTLEYKVNITRAIPLGMFVHCDALVDHAGRTTSVAHGEIRGAEDGKLYATGSTTCIIMKPG

Sequences:

>Translated_160_residues
MPYAAQTPDDLLPRSEILGMSGLTFMQRVLKGEIAGAPIAATLNFNLLEVEEGRVRFCGTPEFSAMNPSGAVHGGWYGAL
LDSALGCAVMTKVPQGSVYTTLEYKVNITRAIPLGMFVHCDALVDHAGRTTSVAHGEIRGAEDGKLYATGSTTCIIMKPG
>Mature_159_residues
PYAAQTPDDLLPRSEILGMSGLTFMQRVLKGEIAGAPIAATLNFNLLEVEEGRVRFCGTPEFSAMNPSGAVHGGWYGALL
DSALGCAVMTKVPQGSVYTTLEYKVNITRAIPLGMFVHCDALVDHAGRTTSVAHGEIRGAEDGKLYATGSTTCIIMKPG

Specific function: Unknown

COG id: COG2050

COG function: function code Q; Uncharacterized protein, possibly involved in aromatic compounds catabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16934; Mature: 16803

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.9 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYAAQTPDDLLPRSEILGMSGLTFMQRVLKGEIAGAPIAATLNFNLLEVEEGRVRFCGT
CCCCCCCCHHHCCHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCEEEECC
PEFSAMNPSGAVHGGWYGALLDSALGCAVMTKVPQGSVYTTLEYKVNITRAIPLGMFVHC
CCCCCCCCCCCCCCCHHHHHHHHHHCEEEEEECCCCCEEEEEEEEEEEEEECCCCEEEEH
DALVDHAGRTTSVAHGEIRGAEDGKLYATGSTTCIIMKPG
HHHHHCCCCCCEECCCEECCCCCCEEEECCCCEEEEECCC
>Mature Secondary Structure 
PYAAQTPDDLLPRSEILGMSGLTFMQRVLKGEIAGAPIAATLNFNLLEVEEGRVRFCGT
CCCCCCCHHHCCHHHHCCCCCHHHHHHHHHCCCCCCCEEEEEEEEEEEECCCCEEEECC
PEFSAMNPSGAVHGGWYGALLDSALGCAVMTKVPQGSVYTTLEYKVNITRAIPLGMFVHC
CCCCCCCCCCCCCCCHHHHHHHHHHCEEEEEECCCCCEEEEEEEEEEEEEECCCCEEEEH
DALVDHAGRTTSVAHGEIRGAEDGKLYATGSTTCIIMKPG
HHHHHCCCCCCEECCCEECCCCCCEEEECCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA