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The map label for this gene is msmE [H]

Identifier: 110679030

GI number: 110679030

Start: 1660166

End: 1661422

Strand: Direct

Name: msmE [H]

Synonym: RD1_1729

Alternate gene names: 110679030

Gene position: 1660166-1661422 (Clockwise)

Preceding gene: 110679025

Following gene: 110679031

Centisome position: 40.17

GC content: 56.88

Gene sequence:

>1257_bases
ATGCATAAAAACACTTTCAAGGGGCTGTTTCTGGCCACAACGCTTTTGGGCGCATCAGCCGCGACGGCACAGCAGGCGGA
ATTGACGATTGAAAGCTGGCGCAATGATGACCTTGCTATCTGGCAAGACAAGATCATCCCGGCATTTGAGGCGCAACATC
CGGACATCAGCGTTCGCTTCACACCATCCGCGCCCGCGGAGTACAACGCTGTGCTCAACTCAAAGCTGGATGCGGGATCG
GCGGGGGATATCATCACATGTCGTCCGTTTGACGCATCGCTCGCCCTGTTCGAGGCTGGACGGCTTGCCGATCTGAGCGA
TCTGGAAGGGATGTCGAACTTCTCGGATGTGGCAAAATCGGGCTGGTCCACGGATGATGGCAGCGCGACCTACTGCGTCC
CAATGGCTTCGGTGATCCATGGATTTATCTACAACAAGGATGCTTTCGAAGAAGTCGGTGTGGCCGTGCCGCAGACCGAA
GAAGAGTTCTTTGCCGTGCTGGAAGCGTTCAAGGAAGACGGGAATTACATTCCCATGGCCATGGGCACGAATGATCAGTG
GGAAGCGGCCACGATGGGGTATAACAACATCGGCCCCAACTACTGGAAGGGCGAGGAGGGGCGCATGGCTCTCATCGCCG
GGGAGCAAAAGCTGACGGATGAGGGTTGGGTTGCGCCGTTCCGGCAGTTGGCGAAATGGGGGGCCTATCTGGGTGATGGG
TTTGAAGCGCAGACATATCCTGACAGTCAGAACATCTTTACGCTCGGGCGCGCTGCGATCTACCCGGCCGGAAGCTGGGA
AATCTCGGGCTTCAATGCGCTGGCCGATTTCGAAATGGGTGCCTTCCATCCGCCGGTCCAGAATGCGGGCGATACCTGCT
ACATCTCGGATCACACGGATATCGGTATTGGCATGAATGCGGCCACCGAAAACCCCGAAGCCGCCATGACCTTTCTGAAC
TGGGTGGCATCATCGGAGTTTTCGAATATCTTTGCCAATTCACTGCCGGGGTTCTTCCCGTTGTCCAAGGCCGATGTGGC
GCTCGAAGATCCGCTCGCGCAGGAGTTCATTTCGTGGCGCGGCAAATGCGAAAGCTCCATCCGCTCCACCTATCAAATCC
TGTCGCGTGGCACGCCTAACCTCGAGAACGAAACGTGGAATGCATCCGTCGCGGTTATCAAGGGCGATGAAAGTCCTGAG
GATGCCGCGCAGCGTCTGCAGGATGGATTGGCCCTGTGGTACACACCACAACAGTAA

Upstream 100 bases:

>100_bases
CGAGAGGACGACTCTGACAGGGTGATCTGTGCGCGTGCTTGCAAGATGCGGGAATAAAAACAAAAATGAACATCTGACGA
CATTCCAACGGGAGACACCA

Downstream 100 bases:

>100_bases
CGCCTGCGGCAAATCCCCCGGGGCGATGCATGCTCGCCCCGGGGTTTGACCCGCGCTGACATCGCCAAGGAGACGCCGCA
TGCCTGCGCCCTCAAAACCG

Product: sugar ABC transporter, periplasmic sugar-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 418; Mature: 418

Protein sequence:

>418_residues
MHKNTFKGLFLATTLLGASAATAQQAELTIESWRNDDLAIWQDKIIPAFEAQHPDISVRFTPSAPAEYNAVLNSKLDAGS
AGDIITCRPFDASLALFEAGRLADLSDLEGMSNFSDVAKSGWSTDDGSATYCVPMASVIHGFIYNKDAFEEVGVAVPQTE
EEFFAVLEAFKEDGNYIPMAMGTNDQWEAATMGYNNIGPNYWKGEEGRMALIAGEQKLTDEGWVAPFRQLAKWGAYLGDG
FEAQTYPDSQNIFTLGRAAIYPAGSWEISGFNALADFEMGAFHPPVQNAGDTCYISDHTDIGIGMNAATENPEAAMTFLN
WVASSEFSNIFANSLPGFFPLSKADVALEDPLAQEFISWRGKCESSIRSTYQILSRGTPNLENETWNASVAVIKGDESPE
DAAQRLQDGLALWYTPQQ

Sequences:

>Translated_418_residues
MHKNTFKGLFLATTLLGASAATAQQAELTIESWRNDDLAIWQDKIIPAFEAQHPDISVRFTPSAPAEYNAVLNSKLDAGS
AGDIITCRPFDASLALFEAGRLADLSDLEGMSNFSDVAKSGWSTDDGSATYCVPMASVIHGFIYNKDAFEEVGVAVPQTE
EEFFAVLEAFKEDGNYIPMAMGTNDQWEAATMGYNNIGPNYWKGEEGRMALIAGEQKLTDEGWVAPFRQLAKWGAYLGDG
FEAQTYPDSQNIFTLGRAAIYPAGSWEISGFNALADFEMGAFHPPVQNAGDTCYISDHTDIGIGMNAATENPEAAMTFLN
WVASSEFSNIFANSLPGFFPLSKADVALEDPLAQEFISWRGKCESSIRSTYQILSRGTPNLENETWNASVAVIKGDESPE
DAAQRLQDGLALWYTPQQ
>Mature_418_residues
MHKNTFKGLFLATTLLGASAATAQQAELTIESWRNDDLAIWQDKIIPAFEAQHPDISVRFTPSAPAEYNAVLNSKLDAGS
AGDIITCRPFDASLALFEAGRLADLSDLEGMSNFSDVAKSGWSTDDGSATYCVPMASVIHGFIYNKDAFEEVGVAVPQTE
EEFFAVLEAFKEDGNYIPMAMGTNDQWEAATMGYNNIGPNYWKGEEGRMALIAGEQKLTDEGWVAPFRQLAKWGAYLGDG
FEAQTYPDSQNIFTLGRAAIYPAGSWEISGFNALADFEMGAFHPPVQNAGDTCYISDHTDIGIGMNAATENPEAAMTFLN
WVASSEFSNIFANSLPGFFPLSKADVALEDPLAQEFISWRGKCESSIRSTYQILSRGTPNLENETWNASVAVIKGDESPE
DAAQRLQDGLALWYTPQQ

Specific function: Involved in a binding protein-dependent transport system responsible for the uptake of melibiose, raffinose and isomaltotriose [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 45590; Mature: 45590

Theoretical pI: Translated: 4.01; Mature: 4.01

Prosite motif: PS01037 SBP_BACTERIAL_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHKNTFKGLFLATTLLGASAATAQQAELTIESWRNDDLAIWQDKIIPAFEAQHPDISVRF
CCCCHHHHHHHHHHHHCCCCCCCHHHEEEHHHCCCCCEEEECCCCCCHHCCCCCCEEEEE
TPSAPAEYNAVLNSKLDAGSAGDIITCRPFDASLALFEAGRLADLSDLEGMSNFSDVAKS
CCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHCCCCCCCHHHHCCCHHHHHHHHC
GWSTDDGSATYCVPMASVIHGFIYNKDAFEEVGVAVPQTEEEFFAVLEAFKEDGNYIPMA
CCCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEE
MGTNDQWEAATMGYNNIGPNYWKGEEGRMALIAGEQKLTDEGWVAPFRQLAKWGAYLGDG
ECCCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC
FEAQTYPDSQNIFTLGRAAIYPAGSWEISGFNALADFEMGAFHPPVQNAGDTCYISDHTD
CCCCCCCCCCCEEEECCEEECCCCCEEECCCCEEECCCCCCCCCCCCCCCCEEEEECCCC
IGIGMNAATENPEAAMTFLNWVASSEFSNIFANSLPGFFPLSKADVALEDPLAQEFISWR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
GKCESSIRSTYQILSRGTPNLENETWNASVAVIKGDESPEDAAQRLQDGLALWYTPQQ
HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCEEEEECCCC
>Mature Secondary Structure
MHKNTFKGLFLATTLLGASAATAQQAELTIESWRNDDLAIWQDKIIPAFEAQHPDISVRF
CCCCHHHHHHHHHHHHCCCCCCCHHHEEEHHHCCCCCEEEECCCCCCHHCCCCCCEEEEE
TPSAPAEYNAVLNSKLDAGSAGDIITCRPFDASLALFEAGRLADLSDLEGMSNFSDVAKS
CCCCCCHHHHHHHCCCCCCCCCCEEEECCCCCCCHHHCCCCCCCHHHHCCCHHHHHHHHC
GWSTDDGSATYCVPMASVIHGFIYNKDAFEEVGVAVPQTEEEFFAVLEAFKEDGNYIPMA
CCCCCCCCEEEEHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHCCCEEEEE
MGTNDQWEAATMGYNNIGPNYWKGEEGRMALIAGEQKLTDEGWVAPFRQLAKWGAYLGDG
ECCCCCCCEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCC
FEAQTYPDSQNIFTLGRAAIYPAGSWEISGFNALADFEMGAFHPPVQNAGDTCYISDHTD
CCCCCCCCCCCEEEECCEEECCCCCEEECCCCEEECCCCCCCCCCCCCCCCEEEEECCCC
IGIGMNAATENPEAAMTFLNWVASSEFSNIFANSLPGFFPLSKADVALEDPLAQEFISWR
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
GKCESSIRSTYQILSRGTPNLENETWNASVAVIKGDESPEDAAQRLQDGLALWYTPQQ
HHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1537846; 12397186 [H]