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The map label for this gene is soxB [H]

Identifier: 110679004

GI number: 110679004

Start: 1635191

End: 1636444

Strand: Direct

Name: soxB [H]

Synonym: RD1_1701

Alternate gene names: 110679004

Gene position: 1635191-1636444 (Clockwise)

Preceding gene: 110679001

Following gene: 110679005

Centisome position: 39.56

GC content: 60.77

Gene sequence:

>1254_bases
ATGACCCATTTTTCCGGGATATCGCTCCTCAAGAATGCTCTGTCCGGCCATAAGAACTGGCCCGAGCAATGGCCCGACTC
GGCTCCCAAGGACGAATACGATGTGATCATCGTCGGTGCGGGTGGTCACGGGTTGGGCGCGGCCTATTACCTTGCGAAAG
AACACGGCATCACGAATGTCGCCGTGATCGAAAAAGGTTGGCTCGGTGGTGGCAATACCGGGCGGAACACGACGATTATC
CGATCCAACTATCTCTATGACGAAAGCGCGCGGCTTTTTGATCATGCCCTTGATCTGTGGGACAACCTGAGCACTGAATT
GAACTACAACGTGATGTATTCAAAGCGCGGTGTGATGATGCTCGCGCATAATGTGCATGACGTCCAAAGCTTCCAGCGGC
ATATTCACGCCAACCGCCTGAACGGTGTGGACAACCGCTGGCTCACCCCGAAAGAGGCGCAGGAATTTTGCCCGCCGCTC
AATATCTCGCCGGATGCGCGCTATCCGGTCATGGGCGCTGCCTTGCAGCAACGCGCAGGAACCGCACGGCACGACGCGGT
GGCCTGGGGGTATGCACGTCAGGCAGCAAAACGCGGCGTGGATATCATCCAGAACTGCCCGGTGCTGTCGATCCGGCGTG
GTGCAGATGGCGCGGTCGAGGGCGTGGAAACCGGCAAAGGGTTCATCAAGGCCAAGAAGGTCGCCGTCTCCGCCGCCGGA
CACACCAGCGTGGTGATGGACACAGCCGGCGTGCGCATGCCCTTGGAAAGCTATCCGCTGCAAGCGCTTGTCTCGGAACC
GATCAAGCCCGTGTTCCCGTGCGTAGTGATGTCCAACACCGTGCACGCCTACATCAGCCAGTCCGACAAGGGCGAGTTGG
TAATCGGGTCGGGCACCGATCAATACACCAGCTATTCGCAGCGCGGTGGCTTGCCCCTGATCGAACACACCGTCGCGGCG
ATCTGCGAGATTTTCCCGATCTTCAACCGCATGCGGATGCTGCGTAAATGGGGCGGTATCGTCGATGTGACCCCGGACCG
CTCGGCCATTCTGGGCAAGACGCCGGTCAAGGGGCTCTATGTCAACTGCGGCTGGGGCACGGGGGGCTTCAAGGCCACGC
CGGGGGCGGCGCACACGCTGGCATGGACCGTTGCAAAGGACGAACCGCACCCGATCAACGCGCCCTTCACGCTGGAGCGT
TTCACGACGGGTCGGCTCATCGACGAAGCCGCCGCCGCCGCCGTCGCGCATTAA

Upstream 100 bases:

>100_bases
ATATAATAACGCGCATCTGGCGTTATTATACAGCGGCGACTCGGGATAATGTGTTAACGAGCGCGAGCTTCACATTTTGA
CTGTTCGGGAAGGCCGCATC

Downstream 100 bases:

>100_bases
GGAGAAATCTGATGCTATTGATACATTGCCCCTATTGCGATGAGACGCTGCCCGAATTGGAATTCGCGTATGCGGGTGAG
GCGCACATCGACCGCCCCGC

Product: sarcosine oxidase, beta subunit

Products: NA

Alternate protein names: Sarcosine oxidase subunit B [H]

Number of amino acids: Translated: 417; Mature: 416

Protein sequence:

>417_residues
MTHFSGISLLKNALSGHKNWPEQWPDSAPKDEYDVIIVGAGGHGLGAAYYLAKEHGITNVAVIEKGWLGGGNTGRNTTII
RSNYLYDESARLFDHALDLWDNLSTELNYNVMYSKRGVMMLAHNVHDVQSFQRHIHANRLNGVDNRWLTPKEAQEFCPPL
NISPDARYPVMGAALQQRAGTARHDAVAWGYARQAAKRGVDIIQNCPVLSIRRGADGAVEGVETGKGFIKAKKVAVSAAG
HTSVVMDTAGVRMPLESYPLQALVSEPIKPVFPCVVMSNTVHAYISQSDKGELVIGSGTDQYTSYSQRGGLPLIEHTVAA
ICEIFPIFNRMRMLRKWGGIVDVTPDRSAILGKTPVKGLYVNCGWGTGGFKATPGAAHTLAWTVAKDEPHPINAPFTLER
FTTGRLIDEAAAAAVAH

Sequences:

>Translated_417_residues
MTHFSGISLLKNALSGHKNWPEQWPDSAPKDEYDVIIVGAGGHGLGAAYYLAKEHGITNVAVIEKGWLGGGNTGRNTTII
RSNYLYDESARLFDHALDLWDNLSTELNYNVMYSKRGVMMLAHNVHDVQSFQRHIHANRLNGVDNRWLTPKEAQEFCPPL
NISPDARYPVMGAALQQRAGTARHDAVAWGYARQAAKRGVDIIQNCPVLSIRRGADGAVEGVETGKGFIKAKKVAVSAAG
HTSVVMDTAGVRMPLESYPLQALVSEPIKPVFPCVVMSNTVHAYISQSDKGELVIGSGTDQYTSYSQRGGLPLIEHTVAA
ICEIFPIFNRMRMLRKWGGIVDVTPDRSAILGKTPVKGLYVNCGWGTGGFKATPGAAHTLAWTVAKDEPHPINAPFTLER
FTTGRLIDEAAAAAVAH
>Mature_416_residues
THFSGISLLKNALSGHKNWPEQWPDSAPKDEYDVIIVGAGGHGLGAAYYLAKEHGITNVAVIEKGWLGGGNTGRNTTIIR
SNYLYDESARLFDHALDLWDNLSTELNYNVMYSKRGVMMLAHNVHDVQSFQRHIHANRLNGVDNRWLTPKEAQEFCPPLN
ISPDARYPVMGAALQQRAGTARHDAVAWGYARQAAKRGVDIIQNCPVLSIRRGADGAVEGVETGKGFIKAKKVAVSAAGH
TSVVMDTAGVRMPLESYPLQALVSEPIKPVFPCVVMSNTVHAYISQSDKGELVIGSGTDQYTSYSQRGGLPLIEHTVAAI
CEIFPIFNRMRMLRKWGGIVDVTPDRSAILGKTPVKGLYVNCGWGTGGFKATPGAAHTLAWTVAKDEPHPINAPFTLERF
TTGRLIDEAAAAAVAH

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the soxB family [H]

Homologues:

Organism=Homo sapiens, GI197927446, Length=396, Percent_Identity=23.989898989899, Blast_Score=89, Evalue=6e-18,
Organism=Homo sapiens, GI21361378, Length=396, Percent_Identity=23.989898989899, Blast_Score=89, Evalue=6e-18,
Organism=Drosophila melanogaster, GI20130091, Length=383, Percent_Identity=23.2375979112272, Blast_Score=77, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006076
- InterPro:   IPR006278 [H]

Pfam domain/function: PF01266 DAO [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 45292; Mature: 45161

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTHFSGISLLKNALSGHKNWPEQWPDSAPKDEYDVIIVGAGGHGLGAAYYLAKEHGITNV
CCCCHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCEEEEECCCCCCCHHEEEHHHCCCCEE
AVIEKGWLGGGNTGRNTTIIRSNYLYDESARLFDHALDLWDNLSTELNYNVMYSKRGVMM
EEEECCCCCCCCCCCCEEEEEECCEECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEE
LAHNVHDVQSFQRHIHANRLNGVDNRWLTPKEAQEFCPPLNISPDARYPVMGAALQQRAG
EECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCC
TARHDAVAWGYARQAAKRGVDIIQNCPVLSIRRGADGAVEGVETGKGFIKAKKVAVSAAG
CCHHHHHHHHHHHHHHHCCHHHHHCCCEEEEECCCCCCCCCHHCCCCCEEEEEEEEEECC
HTSVVMDTAGVRMPLESYPLQALVSEPIKPVFPCVVMSNTVHAYISQSDKGELVIGSGTD
CCEEEEECCCCCCCHHHCCHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCCCEEEECCCC
QYTSYSQRGGLPLIEHTVAAICEIFPIFNRMRMLRKWGGIVDVTPDRSAILGKTPVKGLY
HHHCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEECCCCCCEEE
VNCGWGTGGFKATPGAAHTLAWTVAKDEPHPINAPFTLERFTTGRLIDEAAAAAVAH
EECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
THFSGISLLKNALSGHKNWPEQWPDSAPKDEYDVIIVGAGGHGLGAAYYLAKEHGITNV
CCCHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCEEEEECCCCCCCHHEEEHHHCCCCEE
AVIEKGWLGGGNTGRNTTIIRSNYLYDESARLFDHALDLWDNLSTELNYNVMYSKRGVMM
EEEECCCCCCCCCCCCEEEEEECCEECCHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEE
LAHNVHDVQSFQRHIHANRLNGVDNRWLTPKEAQEFCPPLNISPDARYPVMGAALQQRAG
EECCHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCC
TARHDAVAWGYARQAAKRGVDIIQNCPVLSIRRGADGAVEGVETGKGFIKAKKVAVSAAG
CCHHHHHHHHHHHHHHHCCHHHHHCCCEEEEECCCCCCCCCHHCCCCCEEEEEEEEEECC
HTSVVMDTAGVRMPLESYPLQALVSEPIKPVFPCVVMSNTVHAYISQSDKGELVIGSGTD
CCEEEEECCCCCCCHHHCCHHHHHHCCCCHHHHHHHHCCCEEEEECCCCCCCEEEECCCC
QYTSYSQRGGLPLIEHTVAAICEIFPIFNRMRMLRKWGGIVDVTPDRSAILGKTPVKGLY
HHHCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEECCCCCCEEE
VNCGWGTGGFKATPGAAHTLAWTVAKDEPHPINAPFTLERFTTGRLIDEAAAAAVAH
EECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEEECCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7543100; 1939012; 3202887; 7692961 [H]