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The map label for this gene is soxD [H]

Identifier: 110679005

GI number: 110679005

Start: 1636456

End: 1636755

Strand: Direct

Name: soxD [H]

Synonym: RD1_1702

Alternate gene names: 110679005

Gene position: 1636456-1636755 (Clockwise)

Preceding gene: 110679004

Following gene: 110679006

Centisome position: 39.59

GC content: 58.67

Gene sequence:

>300_bases
ATGCTATTGATACATTGCCCCTATTGCGATGAGACGCTGCCCGAATTGGAATTCGCGTATGCGGGTGAGGCGCACATCGA
CCGCCCCGCCGATCCATCAAAGCTGACGGATGAGGAATGGCGCGATTTCCTGTTTATCCGTACCAACGTGAAAGGCGTGC
ACGCCGAGCGCTGGCGTCACATCAACGGTTGCGGACGCTTTTTCAATGCCCTGCGGGACACGGTCAGTGACCGTTTTGTC
ACAACCTACAAGGCCGGGCAGCCCCGCCCTGACACGACAGCCGAGGAGGCCGGGAAATGA

Upstream 100 bases:

>100_bases
CGCACCCGATCAACGCGCCCTTCACGCTGGAGCGTTTCACGACGGGTCGGCTCATCGACGAAGCCGCCGCCGCCGCCGTC
GCGCATTAAGGAGAAATCTG

Downstream 100 bases:

>100_bases
ACGAATTTCGTGTAGAAGGCCGGGGCCGTGTCAACGCGGAAAAGCCGGTAAAATTCATATTCGACGGCGAAATCTACAAA
GGTCTTGAGGGTGACACGGT

Product: sarcosine oxidase, delta subunit

Products: NA

Alternate protein names: Sarcosine oxidase subunit D [H]

Number of amino acids: Translated: 99; Mature: 99

Protein sequence:

>99_residues
MLLIHCPYCDETLPELEFAYAGEAHIDRPADPSKLTDEEWRDFLFIRTNVKGVHAERWRHINGCGRFFNALRDTVSDRFV
TTYKAGQPRPDTTAEEAGK

Sequences:

>Translated_99_residues
MLLIHCPYCDETLPELEFAYAGEAHIDRPADPSKLTDEEWRDFLFIRTNVKGVHAERWRHINGCGRFFNALRDTVSDRFV
TTYKAGQPRPDTTAEEAGK
>Mature_99_residues
MLLIHCPYCDETLPELEFAYAGEAHIDRPADPSKLTDEEWRDFLFIRTNVKGVHAERWRHINGCGRFFNALRDTVSDRFV
TTYKAGQPRPDTTAEEAGK

Specific function: Catalyzes the oxidative demethylation of sarcosine to yield glycine, hydrogen peroxide and 5,10- methylenetetrahydrofolate [H]

COG id: COG4311

COG function: function code E; Sarcosine oxidase delta subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006279 [H]

Pfam domain/function: PF04267 SoxD [H]

EC number: =1.5.3.1 [H]

Molecular weight: Translated: 11413; Mature: 11413

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLIHCPYCDETLPELEFAYAGEAHIDRPADPSKLTDEEWRDFLFIRTNVKGVHAERWRH
CEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHCEEEEECCCCCCCHHHHHH
INGCGRFFNALRDTVSDRFVTTYKAGQPRPDTTAEEAGK
HHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLLIHCPYCDETLPELEFAYAGEAHIDRPADPSKLTDEEWRDFLFIRTNVKGVHAERWRH
CEEEECCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCHHHHCEEEEECCCCCCCHHHHHH
INGCGRFFNALRDTVSDRFVTTYKAGQPRPDTTAEEAGK
HHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7543100 [H]