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The map label for this gene is ycgF [C]

Identifier: 110678957

GI number: 110678957

Start: 1590521

End: 1590916

Strand: Direct

Name: ycgF [C]

Synonym: RD1_1653

Alternate gene names: 110678957

Gene position: 1590521-1590916 (Clockwise)

Preceding gene: 110678946

Following gene: 110678960

Centisome position: 38.48

GC content: 55.05

Gene sequence:

>396_bases
ATGGCGCTGCAACAACTCATCTATGCGTCGCGGCCCTTCGGATATGATTCATCCGTCTTGGCGGGCATTCTGTCCAAAGC
GCGTGTCAGCAACAAGCAGAACGACATCACCGGATCGCTGATCTGCCGGTCCGATATCTATCTGCAACTCATTGAGGGTC
CGTCAGAAAAAATCGACACACTGTTCGAAAAGATACGCAGGGATGATCGCCACGTTGAGGTCACCGTCTTGTCACGCGCG
CAGCCACAAGACCGGCTGTTCCCGGAGTGGGACATGAAACATGATCCGGCGCATTCGTGGCTTTGGTCGCCGGATGAAAT
CCACGATGGCATCCTGCAGACCGTTTCCGCAGATCAGGTGAGGGCGGTATTTATCCGCTCATCCGAGGCGTCATAA

Upstream 100 bases:

>100_bases
AGAAACAGGCTTACGCAATCGCAATTTAGGCGCGAAAGTCACTGGACAGCTTTGCAAATCAGGATCACATTGAGGGCGGT
CTGGACAAGGGTGGACAACA

Downstream 100 bases:

>100_bases
GCGCTCTGACGCGGCCCAGTCCCAATACATCTCGCGCAGTCGCCGGGTCACCGGACCCATCTGATAGGATGTGTCCTCAA
ACGCCTTGACGGCGGTGATC

Product: photopigment and puc activator

Products: NA

Alternate protein names: BLUF Domain Protein; Photopigment And Puc Activator

Number of amino acids: Translated: 131; Mature: 130

Protein sequence:

>131_residues
MALQQLIYASRPFGYDSSVLAGILSKARVSNKQNDITGSLICRSDIYLQLIEGPSEKIDTLFEKIRRDDRHVEVTVLSRA
QPQDRLFPEWDMKHDPAHSWLWSPDEIHDGILQTVSADQVRAVFIRSSEAS

Sequences:

>Translated_131_residues
MALQQLIYASRPFGYDSSVLAGILSKARVSNKQNDITGSLICRSDIYLQLIEGPSEKIDTLFEKIRRDDRHVEVTVLSRA
QPQDRLFPEWDMKHDPAHSWLWSPDEIHDGILQTVSADQVRAVFIRSSEAS
>Mature_130_residues
ALQQLIYASRPFGYDSSVLAGILSKARVSNKQNDITGSLICRSDIYLQLIEGPSEKIDTLFEKIRRDDRHVEVTVLSRAQ
PQDRLFPEWDMKHDPAHSWLWSPDEIHDGILQTVSADQVRAVFIRSSEAS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 14924; Mature: 14793

Theoretical pI: Translated: 5.60; Mature: 5.60

Prosite motif: PS50925 BLUF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALQQLIYASRPFGYDSSVLAGILSKARVSNKQNDITGSLICRSDIYLQLIEGPSEKIDT
CCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECCCCHHHHH
LFEKIRRDDRHVEVTVLSRAQPQDRLFPEWDMKHDPAHSWLWSPDEIHDGILQTVSADQV
HHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCE
RAVFIRSSEAS
EEEEEECCCCC
>Mature Secondary Structure 
ALQQLIYASRPFGYDSSVLAGILSKARVSNKQNDITGSLICRSDIYLQLIEGPSEKIDT
CHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEEEECCCCHHHHH
LFEKIRRDDRHVEVTVLSRAQPQDRLFPEWDMKHDPAHSWLWSPDEIHDGILQTVSADQV
HHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCE
RAVFIRSSEAS
EEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA