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The map label for this gene is 110678946

Identifier: 110678946

GI number: 110678946

Start: 1580085

End: 1581485

Strand: Direct

Name: 110678946

Synonym: RD1_1640

Alternate gene names: NA

Gene position: 1580085-1581485 (Clockwise)

Preceding gene: 110678945

Following gene: 110678957

Centisome position: 38.23

GC content: 61.67

Gene sequence:

>1401_bases
ATGGCGATCACCGGTAAGGCGGGTTCGGGAAAAACCCTCCTGCTTGCAGAGCTTTACAAGGCCATCCAGGAAGCGGGCGT
TGATGTGGTTTCAGGGGACTATGAGCCGCGCAAGAAACGCGACAGGCGCACATTGGCCATTCTGGCGCCGACCAACAAGG
CGGCATCGGTGCTGCGGTTGCGCGGTGTTCCGGCAACCACGATCCACCGCATTTTATACACCCCGGTCTATGATCCCGAA
TATGAACGGATTGCGGAATGGCTGGCCGGCAGTGGTGACAAACCCGAGACCCAAGCGTTGAGCGAAGCAGCGTTGGCGCG
CGCCGAAGCCTTTTATGCCAACAATAAATCCATCCCCGGCGCGCTGGCGGCCGCAGGATTGCGCGGTTCGGATTTTATCA
CAGGCTGGAAACGCCGTGAGGAACCGCTTGATATCGGTTTCGTGGATGAATCCTCCATGCTCGATGACAGGCAATTCGAG
GATCTGCGCGAGATTTTCCCCACGCTTTTGCTTTTCGGGGATCCGGCGCAACTCGCCCCGGTCAACCAGTCCGGCGCGAT
GGTGTTCGACAAACTCCCGGCCCCGCGCGTCCTGAAACTCAGCCGCGTGCACCGTCAGGAAGCGGACAACCCGATCCTTG
ATCTGGCGCATGCCCTGTCGGACCCCGACATCGGTTTTGAAACCTTCGAACGTATGGTCGAAGACGCCGCAAGTCGCGAT
GAACGTGTCGTCTGGGGTCAGCGGGTCGAGGTCGACCTGATGGCGCGCAGCCCGGTGCTGGTTTGGCGCAACGCGACCCG
GATCCGCTTGATCAATGCCTTTCGTCAGGTGCATGGCGCGCCCGAAGATGCGTTGCTGGAAGGTGAACCGCTGATCTGCG
ACGGGCTGGAACTGCCCTTGAAACACCGCAAGAAACGTCTGGATCTTGAGGCGCGCGGGCTGATCAAAGGGGCGCAGGTG
ATCTATCTGGGCGAGGGGCGCAAACCGGGGTTCAGCCGTTTGCACGTGATGGGGGCCGAAGACCCGCAAGTCTCTGCCGC
GTCGATCGTAAAGATTGAAAAACCCGATGAAGAAGAACCGTTCATCCCCTTTGCCGCGCGCATGGGCGCGACTTTTCTGC
ATGGGGCGGCGGTGACGATCCACAAGGCGCAGGGCAGCCAGTGGGACACGGTACAGGTCTTTGCACCCGACCTTTACGCA
GCGGCGCGCATGGGGCGGTCCGAGGCCGGACAACCGCTGTGGAAACGGCTGGCCTACGTGGCGATCACGCGCGCGCAAAA
CAGGTTGGTCTGGGTGGTGCGCAACCGTCTTGCAAAGCCCACGGGTGGGTTGCGGGTTGATGATCTGCGCGCCTTGCCCG
CCGCGCCGCTGAGCCTTGCGCAACCCGAGACGGAGGGGTGA

Upstream 100 bases:

>100_bases
AGCGGTTGCCTTTGATGCGGTAACTGCTTTGCTGAGCGAGGCAGGCATAAACCTCGAAGATCAACTCCTGATGCCGCCGC
GCAGTTCCAAGGCGGCGGTC

Downstream 100 bases:

>100_bases
AGGTGCCGGTCGGGCGGCGTCAAGCGCGAAAAAGCTTGAAAACGGCGGCCGCCCCCCAGCCTGCGGCGATGGCGATGGCA
AGTGACATCAACCCGTAGAT

Product: hypothetical protein

Products: NA

Alternate protein names: Deoxyribonuclease; Exodeoxyribonuclease V; AAA ATPase; AAA Family ATPase; Helicase ATP-Dependent; Exonuclease V Subunit Alpha

Number of amino acids: Translated: 466; Mature: 465

Protein sequence:

>466_residues
MAITGKAGSGKTLLLAELYKAIQEAGVDVVSGDYEPRKKRDRRTLAILAPTNKAASVLRLRGVPATTIHRILYTPVYDPE
YERIAEWLAGSGDKPETQALSEAALARAEAFYANNKSIPGALAAAGLRGSDFITGWKRREEPLDIGFVDESSMLDDRQFE
DLREIFPTLLLFGDPAQLAPVNQSGAMVFDKLPAPRVLKLSRVHRQEADNPILDLAHALSDPDIGFETFERMVEDAASRD
ERVVWGQRVEVDLMARSPVLVWRNATRIRLINAFRQVHGAPEDALLEGEPLICDGLELPLKHRKKRLDLEARGLIKGAQV
IYLGEGRKPGFSRLHVMGAEDPQVSAASIVKIEKPDEEEPFIPFAARMGATFLHGAAVTIHKAQGSQWDTVQVFAPDLYA
AARMGRSEAGQPLWKRLAYVAITRAQNRLVWVVRNRLAKPTGGLRVDDLRALPAAPLSLAQPETEG

Sequences:

>Translated_466_residues
MAITGKAGSGKTLLLAELYKAIQEAGVDVVSGDYEPRKKRDRRTLAILAPTNKAASVLRLRGVPATTIHRILYTPVYDPE
YERIAEWLAGSGDKPETQALSEAALARAEAFYANNKSIPGALAAAGLRGSDFITGWKRREEPLDIGFVDESSMLDDRQFE
DLREIFPTLLLFGDPAQLAPVNQSGAMVFDKLPAPRVLKLSRVHRQEADNPILDLAHALSDPDIGFETFERMVEDAASRD
ERVVWGQRVEVDLMARSPVLVWRNATRIRLINAFRQVHGAPEDALLEGEPLICDGLELPLKHRKKRLDLEARGLIKGAQV
IYLGEGRKPGFSRLHVMGAEDPQVSAASIVKIEKPDEEEPFIPFAARMGATFLHGAAVTIHKAQGSQWDTVQVFAPDLYA
AARMGRSEAGQPLWKRLAYVAITRAQNRLVWVVRNRLAKPTGGLRVDDLRALPAAPLSLAQPETEG
>Mature_465_residues
AITGKAGSGKTLLLAELYKAIQEAGVDVVSGDYEPRKKRDRRTLAILAPTNKAASVLRLRGVPATTIHRILYTPVYDPEY
ERIAEWLAGSGDKPETQALSEAALARAEAFYANNKSIPGALAAAGLRGSDFITGWKRREEPLDIGFVDESSMLDDRQFED
LREIFPTLLLFGDPAQLAPVNQSGAMVFDKLPAPRVLKLSRVHRQEADNPILDLAHALSDPDIGFETFERMVEDAASRDE
RVVWGQRVEVDLMARSPVLVWRNATRIRLINAFRQVHGAPEDALLEGEPLICDGLELPLKHRKKRLDLEARGLIKGAQVI
YLGEGRKPGFSRLHVMGAEDPQVSAASIVKIEKPDEEEPFIPFAARMGATFLHGAAVTIHKAQGSQWDTVQVFAPDLYAA
ARMGRSEAGQPLWKRLAYVAITRAQNRLVWVVRNRLAKPTGGLRVDDLRALPAAPLSLAQPETEG

Specific function: Unknown

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 51345; Mature: 51214

Theoretical pI: Translated: 7.30; Mature: 7.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAITGKAGSGKTLLLAELYKAIQEAGVDVVSGDYEPRKKRDRRTLAILAPTNKAASVLRL
CEECCCCCCCCEEHHHHHHHHHHHCCCEEECCCCCCHHHCCCCEEEEEECCCHHHHHHHC
RGVPATTIHRILYTPVYDPEYERIAEWLAGSGDKPETQALSEAALARAEAFYANNKSIPG
CCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCH
ALAAAGLRGSDFITGWKRREEPLDIGFVDESSMLDDRQFEDLREIFPTLLLFGDPAQLAP
HHHHCCCCCCCHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHEEECCCHHCCC
VNQSGAMVFDKLPAPRVLKLSRVHRQEADNPILDLAHALSDPDIGFETFERMVEDAASRD
CCCCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
ERVVWGQRVEVDLMARSPVLVWRNATRIRLINAFRQVHGAPEDALLEGEPLICDGLELPL
CEEECCCEEEEEEEECCCEEEECCCCHHHHHHHHHHHCCCCCCCEECCCCCEECCCCCCH
KHRKKRLDLEARGLIKGAQVIYLGEGRKPGFSRLHVMGAEDPQVSAASIVKIEKPDEEEP
HHHHHHCCCHHHCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCC
FIPFAARMGATFLHGAAVTIHKAQGSQWDTVQVFAPDLYAAARMGRSEAGQPLWKRLAYV
CCCHHHHHCCHHHCCCEEEEEECCCCCCCEEEEECCHHHHHHHCCCCCCCCHHHHHHHHH
AITRAQNRLVWVVRNRLAKPTGGLRVDDLRALPAAPLSLAQPETEG
HHHHCCCCEEEEEHHHCCCCCCCCEEHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AITGKAGSGKTLLLAELYKAIQEAGVDVVSGDYEPRKKRDRRTLAILAPTNKAASVLRL
EECCCCCCCCEEHHHHHHHHHHHCCCEEECCCCCCHHHCCCCEEEEEECCCHHHHHHHC
RGVPATTIHRILYTPVYDPEYERIAEWLAGSGDKPETQALSEAALARAEAFYANNKSIPG
CCCCHHHHHHHHCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCH
ALAAAGLRGSDFITGWKRREEPLDIGFVDESSMLDDRQFEDLREIFPTLLLFGDPAQLAP
HHHHCCCCCCCHHCCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHEEECCCHHCCC
VNQSGAMVFDKLPAPRVLKLSRVHRQEADNPILDLAHALSDPDIGFETFERMVEDAASRD
CCCCCCEEEECCCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
ERVVWGQRVEVDLMARSPVLVWRNATRIRLINAFRQVHGAPEDALLEGEPLICDGLELPL
CEEECCCEEEEEEEECCCEEEECCCCHHHHHHHHHHHCCCCCCCEECCCCCEECCCCCCH
KHRKKRLDLEARGLIKGAQVIYLGEGRKPGFSRLHVMGAEDPQVSAASIVKIEKPDEEEP
HHHHHHCCCHHHCCCCCCEEEEEECCCCCCCCEEEEECCCCCCCCCEEEEEECCCCCCCC
FIPFAARMGATFLHGAAVTIHKAQGSQWDTVQVFAPDLYAAARMGRSEAGQPLWKRLAYV
CCCHHHHHCCHHHCCCEEEEEECCCCCCCEEEEECCHHHHHHHCCCCCCCCHHHHHHHHH
AITRAQNRLVWVVRNRLAKPTGGLRVDDLRALPAAPLSLAQPETEG
HHHHCCCCEEEEEHHHCCCCCCCCEEHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA