Click here to switch to the map view.

The map label for this gene is yibD [C]

Identifier: 110678884

GI number: 110678884

Start: 1499281

End: 1500342

Strand: Direct

Name: yibD [C]

Synonym: RD1_1577

Alternate gene names: 110678884

Gene position: 1499281-1500342 (Clockwise)

Preceding gene: 110678883

Following gene: 110678885

Centisome position: 36.28

GC content: 55.46

Gene sequence:

>1062_bases
ATGAAACTGTCGGAAGTTGAGACCCTGGTGACAGTTGTCATACCGGCCTACAATGTTGAGACGACACTTGATGCCACGCT
GAACAGCGCTCGCAATCAGTCATATCAAAACCTTGAAATCATCGTTGTTGTCGATGGCGCCACGGATGGCACCGAGGCAA
TCGCACGACAGCATGCGCAACAGGATGAGCGCATATCAATCGTTGTCACGCCCAACTGTGGTTTGTGTCCGGCGCGCAAT
ACCGGGGCGCGTGCGGGGTCGGGCGCTTTCATAGCCCCGCTGGATGCAGATGATATCTGGCACCGCGATAAAATCCAAAA
ACAGCTCGATGTTTTTGCGGCAGGCGGGGACGACATGGGCATGGTCTACACATTGTTCAGGCGGATCGACCAATGGGATT
ATCTGATCCGTGATGGTGCTTTGACCTGTTGGTCGGGCGATGTCTTTCATGCGTCCTTGCTCTATAATTGCGTGGGCAAC
GGCAGTTCGATCATGGTCAGACGCAGCGCTTTCGAGCAGGTCGGCGGCTATGCGATGGAACTGAACCGGGTCGGATGTGA
GGATTACTTGCTGCAGATCCTCATTTCGCATGACTGGCGTGTCGGGGTCGTGCCGGAATACATGACCGGGTATCGGTACG
ACCATGTGTCGATGTCCCGAAACCACGTGCGCATGGCGCTGGCACGGTTGAAACTGCTGGATATCGTCGCGCAACGCCAT
CCTGATGTGCCGGAGGAAATCATGCAACTGGCACGCGCTCAGGCGCGGGCTGAACTGGCGATTTCCAGCGCGCGGGCCGG
AAAGATCGCCAATGCCGTCTCTGAATTCTCGGCGGCATTTCGCATCAACGTATTTGCAACCATGGCCTATTCCTTTTATC
GCCTTCGCGATCTCGCCTATCGCTTTATTCGCTCTGCCGGGGCGAATTTCAAACGCAGCAAACCACCAAGGTTTCAGGAT
ATGGACCCCAAGACGCATTATGGTGTGTCCTATCACCCTCTGCGTTCTCGCACGATGCGGCGTCTTTTGCGTCAATCGTC
CGTGTCTACCAGGCAATGCTGA

Upstream 100 bases:

>100_bases
AATTATGGCAGGGTGATTTCCGGAGGCGCATTTTTCCCTTTCCAATGCGATGATCTAGATTGATAAGTTCGGCTTGGTTC
GGTGCATGGGCGTGGATACG

Downstream 100 bases:

>100_bases
GCCAAGGTTCAATGAGCATGCGCAGTGATCTGGTGGCGATTGATCGGCGCAGGATACCGCGACAACACAGCCCATCGGGT
GGCTGTCGATTGGCGCGCGG

Product: glycosyl transferase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 353; Mature: 353

Protein sequence:

>353_residues
MKLSEVETLVTVVIPAYNVETTLDATLNSARNQSYQNLEIIVVVDGATDGTEAIARQHAQQDERISIVVTPNCGLCPARN
TGARAGSGAFIAPLDADDIWHRDKIQKQLDVFAAGGDDMGMVYTLFRRIDQWDYLIRDGALTCWSGDVFHASLLYNCVGN
GSSIMVRRSAFEQVGGYAMELNRVGCEDYLLQILISHDWRVGVVPEYMTGYRYDHVSMSRNHVRMALARLKLLDIVAQRH
PDVPEEIMQLARAQARAELAISSARAGKIANAVSEFSAAFRINVFATMAYSFYRLRDLAYRFIRSAGANFKRSKPPRFQD
MDPKTHYGVSYHPLRSRTMRRLLRQSSVSTRQC

Sequences:

>Translated_353_residues
MKLSEVETLVTVVIPAYNVETTLDATLNSARNQSYQNLEIIVVVDGATDGTEAIARQHAQQDERISIVVTPNCGLCPARN
TGARAGSGAFIAPLDADDIWHRDKIQKQLDVFAAGGDDMGMVYTLFRRIDQWDYLIRDGALTCWSGDVFHASLLYNCVGN
GSSIMVRRSAFEQVGGYAMELNRVGCEDYLLQILISHDWRVGVVPEYMTGYRYDHVSMSRNHVRMALARLKLLDIVAQRH
PDVPEEIMQLARAQARAELAISSARAGKIANAVSEFSAAFRINVFATMAYSFYRLRDLAYRFIRSAGANFKRSKPPRFQD
MDPKTHYGVSYHPLRSRTMRRLLRQSSVSTRQC
>Mature_353_residues
MKLSEVETLVTVVIPAYNVETTLDATLNSARNQSYQNLEIIVVVDGATDGTEAIARQHAQQDERISIVVTPNCGLCPARN
TGARAGSGAFIAPLDADDIWHRDKIQKQLDVFAAGGDDMGMVYTLFRRIDQWDYLIRDGALTCWSGDVFHASLLYNCVGN
GSSIMVRRSAFEQVGGYAMELNRVGCEDYLLQILISHDWRVGVVPEYMTGYRYDHVSMSRNHVRMALARLKLLDIVAQRH
PDVPEEIMQLARAQARAELAISSARAGKIANAVSEFSAAFRINVFATMAYSFYRLRDLAYRFIRSAGANFKRSKPPRFQD
MDPKTHYGVSYHPLRSRTMRRLLRQSSVSTRQC

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790044, Length=89, Percent_Identity=33.7078651685393, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787259, Length=95, Percent_Identity=33.6842105263158, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001173 [H]

Pfam domain/function: PF00535 Glycos_transf_2 [H]

EC number: 2.-.-.- [C]

Molecular weight: Translated: 39698; Mature: 39698

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLSEVETLVTVVIPAYNVETTLDATLNSARNQSYQNLEIIVVVDGATDGTEAIARQHAQ
CCHHHHHHHHHHEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHCC
QDERISIVVTPNCGLCPARNTGARAGSGAFIAPLDADDIWHRDKIQKQLDVFAAGGDDMG
CCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHEECCCCCHH
MVYTLFRRIDQWDYLIRDGALTCWSGDVFHASLLYNCVGNGSSIMVRRSAFEQVGGYAME
HHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCEEEEEHHHHHHHCCEEEE
LNRVGCEDYLLQILISHDWRVGVVPEYMTGYRYDHVSMSRNHVRMALARLKLLDIVAQRH
HHHCCHHHHHHHHHHHCCCEEECCCHHHCCCEECCHHCCHHHHHHHHHHHHHHHHHHHHC
PDVPEEIMQLARAQARAELAISSARAGKIANAVSEFSAAFRINVFATMAYSFYRLRDLAY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFIRSAGANFKRSKPPRFQDMDPKTHYGVSYHPLRSRTMRRLLRQSSVSTRQC
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKLSEVETLVTVVIPAYNVETTLDATLNSARNQSYQNLEIIVVVDGATDGTEAIARQHAQ
CCHHHHHHHHHHEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHCC
QDERISIVVTPNCGLCPARNTGARAGSGAFIAPLDADDIWHRDKIQKQLDVFAAGGDDMG
CCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHEECCCCCHH
MVYTLFRRIDQWDYLIRDGALTCWSGDVFHASLLYNCVGNGSSIMVRRSAFEQVGGYAME
HHHHHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCCCEEEEEHHHHHHHCCEEEE
LNRVGCEDYLLQILISHDWRVGVVPEYMTGYRYDHVSMSRNHVRMALARLKLLDIVAQRH
HHHCCHHHHHHHHHHHCCCEEECCCHHHCCCEECCHHCCHHHHHHHHHHHHHHHHHHHHC
PDVPEEIMQLARAQARAELAISSARAGKIANAVSEFSAAFRINVFATMAYSFYRLRDLAY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RFIRSAGANFKRSKPPRFQDMDPKTHYGVSYHPLRSRTMRRLLRQSSVSTRQC
HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]