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The map label for this gene is nirJ [H]

Identifier: 110678879

GI number: 110678879

Start: 1494048

End: 1495262

Strand: Direct

Name: nirJ [H]

Synonym: RD1_1572

Alternate gene names: 110678879

Gene position: 1494048-1495262 (Clockwise)

Preceding gene: 110678878

Following gene: 110678880

Centisome position: 36.15

GC content: 60.74

Gene sequence:

>1215_bases
ATGTTTCGACTGACCCAATATATGGAACAGCTGATCACGCCCACACCACCCCGCGTCAGGCGTGGCCCGGTTCGGCCCGT
TGTGATCTGGAACCTGACGCGGCGCTGCAATCTGAAATGCCGTCACTGCTATACGACCTCCTCGGACAATATCTTCCCCG
GTGAATTATCCACGAAACAGGCGCTGGGGGTGATTGACGATCTGGCGGAATTCAAGATTCCCGCGTTGATCCTGTCGGGC
GGTGAGCCGCTGTCGCGTGGGGATATTTACGAGCTTGCACAGTACGCCCGCGAAAAGGTCCGCTATCTGGCGTTGTCGAC
CAATGGCACGCGCATCGACGCCGAGGCGGTGGAAAAGATCGCTGACATCGGGTTCAACTATGTGGGCATCAGCATCGACG
GCGTGGGGGCCACAAATGACTGGTTCCGCGGTCAGGAAGGTGCCTTTGACGAGGCGCTCGCCGGCGCGCGCCTGTGCAAG
GAAAAGGGCATCAAGGTCGGCCTGCGCTTTACCCCCACCGAGGATAACGCCGAACAGCTGCCCGCGATCCTTGATCTCTG
CGAGGCGGAAGGCATTGATAAATTCTACATGTCGCATCTGGTCTATGCCGGGCGCGGCAACAAGAACCGGGGCGAAGACG
CAGGGCATGCCCGCGCACGCTCCTGCGTTGATCTGCTGCTTGATCGCGCGTGGAGCGCGCTGCAACAGGGCCGTCATTTC
GAGGTTGTCACCGGCAACAATGACGCCGATGCAGTGCGGTTCCTGAACTGGGCCAGCGACCGCTTTGCCCCTGAGCAGAT
CGACCACCTGACCGCGCATTTGCAGGCCTGGGGCGGGAATTCCTCCGGTGTCGGCGTGGCCAATATCGACCCCACGGGCA
AGGTGCATCCTGATACCTATTGGTCCGATTACACCGTAGGCAATGTGAAATCCGATACGTTCTCGGACCTCTGGACTGGC
TCAGACGAGATGCTGGCCTTGTTGCGCACGCGACCCCGTCCTTTGAAAGGGCGCTGCGGGGCCTGCGCGCATCAATCGGT
TTGTGGCGGCAACACGCGCATCCGCGCGCTGCAACTGACGGGTGATCCGTGGGAGGAAGACCCCGCCTGCTATCTGTCAG
ACGCCGAGATCGGGTTGGACGGGGCGAAGGCCCCGCGCATTGAACTTCGCAAATTCACCGGGAGGCGACATGATCCGGCG
CATAATTTCACTTAG

Upstream 100 bases:

>100_bases
TGCAATTGCTGGGCTCTGCGGTGCGCGCGCATGACGTGCTCTATTCGACGCAAATCCTCAAGAAAACCGGTCTGCGACTG
GCCAGTAAAGGAGCCACCTG

Downstream 100 bases:

>100_bases
TCTGCTGGCGCTCACACCGCTGAGCGCTCAAGGCGAACCGGCAGTTCTCTATGCCACCCATTGCGCGGTCTGCCACGGCG
ATGACCGTCTGGGCAGCCTT

Product: nitrite reductase heme biosynthesis J protein, putative

Products: NA

Alternate protein names: Pyrroloquinoline quinone biosynthesis protein E [H]

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MFRLTQYMEQLITPTPPRVRRGPVRPVVIWNLTRRCNLKCRHCYTTSSDNIFPGELSTKQALGVIDDLAEFKIPALILSG
GEPLSRGDIYELAQYAREKVRYLALSTNGTRIDAEAVEKIADIGFNYVGISIDGVGATNDWFRGQEGAFDEALAGARLCK
EKGIKVGLRFTPTEDNAEQLPAILDLCEAEGIDKFYMSHLVYAGRGNKNRGEDAGHARARSCVDLLLDRAWSALQQGRHF
EVVTGNNDADAVRFLNWASDRFAPEQIDHLTAHLQAWGGNSSGVGVANIDPTGKVHPDTYWSDYTVGNVKSDTFSDLWTG
SDEMLALLRTRPRPLKGRCGACAHQSVCGGNTRIRALQLTGDPWEEDPACYLSDAEIGLDGAKAPRIELRKFTGRRHDPA
HNFT

Sequences:

>Translated_404_residues
MFRLTQYMEQLITPTPPRVRRGPVRPVVIWNLTRRCNLKCRHCYTTSSDNIFPGELSTKQALGVIDDLAEFKIPALILSG
GEPLSRGDIYELAQYAREKVRYLALSTNGTRIDAEAVEKIADIGFNYVGISIDGVGATNDWFRGQEGAFDEALAGARLCK
EKGIKVGLRFTPTEDNAEQLPAILDLCEAEGIDKFYMSHLVYAGRGNKNRGEDAGHARARSCVDLLLDRAWSALQQGRHF
EVVTGNNDADAVRFLNWASDRFAPEQIDHLTAHLQAWGGNSSGVGVANIDPTGKVHPDTYWSDYTVGNVKSDTFSDLWTG
SDEMLALLRTRPRPLKGRCGACAHQSVCGGNTRIRALQLTGDPWEEDPACYLSDAEIGLDGAKAPRIELRKFTGRRHDPA
HNFT
>Mature_404_residues
MFRLTQYMEQLITPTPPRVRRGPVRPVVIWNLTRRCNLKCRHCYTTSSDNIFPGELSTKQALGVIDDLAEFKIPALILSG
GEPLSRGDIYELAQYAREKVRYLALSTNGTRIDAEAVEKIADIGFNYVGISIDGVGATNDWFRGQEGAFDEALAGARLCK
EKGIKVGLRFTPTEDNAEQLPAILDLCEAEGIDKFYMSHLVYAGRGNKNRGEDAGHARARSCVDLLLDRAWSALQQGRHF
EVVTGNNDADAVRFLNWASDRFAPEQIDHLTAHLQAWGGNSSGVGVANIDPTGKVHPDTYWSDYTVGNVKSDTFSDLWTG
SDEMLALLRTRPRPLKGRCGACAHQSVCGGNTRIRALQLTGDPWEEDPACYLSDAEIGLDGAKAPRIELRKFTGRRHDPA
HNFT

Specific function: Together With Moac, Is Involved In The Conversion Of A Guanosine Derivative (Gxp) Into Molybdopterin Precursor Z. [C]

COG id: COG0535

COG function: function code R; Predicted Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily. PqqE family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR006638
- InterPro:   IPR000385
- InterPro:   IPR017200
- InterPro:   IPR011843
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 44666; Mature: 44666

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRLTQYMEQLITPTPPRVRRGPVRPVVIWNLTRRCNLKCRHCYTTSSDNIFPGELSTKQ
CCCHHHHHHHHHCCCCCHHCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCHHH
ALGVIDDLAEFKIPALILSGGEPLSRGDIYELAQYAREKVRYLALSTNGTRIDAEAVEKI
HHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHEEEEEEECCCCEECHHHHHHH
ADIGFNYVGISIDGVGATNDWFRGQEGAFDEALAGARLCKEKGIKVGLRFTPTEDNAEQL
HHCCCEEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHH
PAILDLCEAEGIDKFYMSHLVYAGRGNKNRGEDAGHARARSCVDLLLDRAWSALQQGRHF
HHHHHHHHHCCCHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEE
EVVTGNNDADAVRFLNWASDRFAPEQIDHLTAHLQAWGGNSSGVGVANIDPTGKVHPDTY
EEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC
WSDYTVGNVKSDTFSDLWTGSDEMLALLRTRPRPLKGRCGACAHQSVCGGNTRIRALQLT
CCCEECCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCEEEEEEEC
GDPWEEDPACYLSDAEIGLDGAKAPRIELRKFTGRRHDPAHNFT
CCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MFRLTQYMEQLITPTPPRVRRGPVRPVVIWNLTRRCNLKCRHCYTTSSDNIFPGELSTKQ
CCCHHHHHHHHHCCCCCHHCCCCCCEEEEEECCCCCCCEEEEEEECCCCCCCCCCCCHHH
ALGVIDDLAEFKIPALILSGGEPLSRGDIYELAQYAREKVRYLALSTNGTRIDAEAVEKI
HHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHEEEEEEECCCCEECHHHHHHH
ADIGFNYVGISIDGVGATNDWFRGQEGAFDEALAGARLCKEKGIKVGLRFTPTEDNAEQL
HHCCCEEEEEEEECCCCCCHHCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHH
PAILDLCEAEGIDKFYMSHLVYAGRGNKNRGEDAGHARARSCVDLLLDRAWSALQQGRHF
HHHHHHHHHCCCHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEE
EVVTGNNDADAVRFLNWASDRFAPEQIDHLTAHLQAWGGNSSGVGVANIDPTGKVHPDTY
EEEECCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCC
WSDYTVGNVKSDTFSDLWTGSDEMLALLRTRPRPLKGRCGACAHQSVCGGNTRIRALQLT
CCCEECCCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCCCCHHCCCCCCCCCEEEEEEEC
GDPWEEDPACYLSDAEIGLDGAKAPRIELRKFTGRRHDPAHNFT
CCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA