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The map label for this gene is xdhB [H]

Identifier: 110678843

GI number: 110678843

Start: 1454922

End: 1455764

Strand: Direct

Name: xdhB [H]

Synonym: RD1_1532

Alternate gene names: 110678843

Gene position: 1454922-1455764 (Clockwise)

Preceding gene: 110678842

Following gene: 110678844

Centisome position: 35.2

GC content: 63.46

Gene sequence:

>843_bases
TTGTCCTATGCAATGCCCTTAACGCTCTGCGAAGCGCTTGCCCTGCTGCGTGATGGCTCGCCGCGTGTCATCGCAGGGTG
CACGGATTTCTTTCCCTCACAAGCGCCGGGCGCGCGCGCGCAGAGCCTCCTTGACATCACGGCGATCTCGGACTGCCGAG
GCATCAGCGAAACAGCGGACGGCTGGCGGATCGGCGCTGCGGTGACTTGGACAGACGTGGTGCGTGCGCCGCTGCCGCCC
GCCTTTGATGCGCTGAAACTGGCCGCGCGCGAGGTCGGGTCAATACAGATACAGAACCGGGGCACCGTGGTGGGCAACAT
CTGCAATGCCTCACCCGCCGCGGATGGTGTGCCGCCACTGCTGGCGCTGAATGCACAGGTCGAGATTGCATCCAGCGACG
CCACCCGCACCGTGCCGCTTAGTGCCTTTATTCAGGGGGTGCGCAAGGTTGATCTGGCGAGGGATGAGATGGTCGTTGCC
GTGATCGTCCCCAAGGTTTCCGCCACTGCACAGAGCGCGTTTCTGAAACTCGGCAGCCGAAAGCATCTGGTGATTTCCAT
CGCGATGGTTGCAGCCGTCGCAGAGGTGCAAAACGGTAGGCTGTCGGACGTGCGCGTCGCCGTTGGCAGCTGTTCTGCGG
TGGCGCAGCGTCTGCCGGGCCTTGAGGCGCGGCTGATCGGGTGTGCTGTCGGTGACGTTGCCACGCTGGATTTTGCAGCA
GACGATAACCTCGCGCCATTGACGCCGATTTCAGATGTGCGCGGATCAGCGGAATACAGAATGGACGTGGCGGCGGAACT
GTGTCGCCGTGCCGTGGTGCAGGCCTGTGGGGGAGGATCGTAG

Upstream 100 bases:

>100_bases
TGACTCGCGTCAGAAAGTGCTATTATCGTTCGTATACAAATGACCAGCGTTAACGTCGTGACCCGATCGCGGCATCAAGT
GGAAATCGAGAGGTGCACAA

Downstream 100 bases:

>100_bases
ATGGATGGGGAAATCCCTGACGCGGGTGTCGCGTTTACCCTGAATGGCGAAGCTGTCACCGTGTCGCCGACCACTGGCGA
GCGGCTGTCAGAGACGCTGC

Product: dehydrogenase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 280; Mature: 279

Protein sequence:

>280_residues
MSYAMPLTLCEALALLRDGSPRVIAGCTDFFPSQAPGARAQSLLDITAISDCRGISETADGWRIGAAVTWTDVVRAPLPP
AFDALKLAAREVGSIQIQNRGTVVGNICNASPAADGVPPLLALNAQVEIASSDATRTVPLSAFIQGVRKVDLARDEMVVA
VIVPKVSATAQSAFLKLGSRKHLVISIAMVAAVAEVQNGRLSDVRVAVGSCSAVAQRLPGLEARLIGCAVGDVATLDFAA
DDNLAPLTPISDVRGSAEYRMDVAAELCRRAVVQACGGGS

Sequences:

>Translated_280_residues
MSYAMPLTLCEALALLRDGSPRVIAGCTDFFPSQAPGARAQSLLDITAISDCRGISETADGWRIGAAVTWTDVVRAPLPP
AFDALKLAAREVGSIQIQNRGTVVGNICNASPAADGVPPLLALNAQVEIASSDATRTVPLSAFIQGVRKVDLARDEMVVA
VIVPKVSATAQSAFLKLGSRKHLVISIAMVAAVAEVQNGRLSDVRVAVGSCSAVAQRLPGLEARLIGCAVGDVATLDFAA
DDNLAPLTPISDVRGSAEYRMDVAAELCRRAVVQACGGGS
>Mature_279_residues
SYAMPLTLCEALALLRDGSPRVIAGCTDFFPSQAPGARAQSLLDITAISDCRGISETADGWRIGAAVTWTDVVRAPLPPA
FDALKLAAREVGSIQIQNRGTVVGNICNASPAADGVPPLLALNAQVEIASSDATRTVPLSAFIQGVRKVDLARDEMVVAV
IVPKVSATAQSAFLKLGSRKHLVISIAMVAAVAEVQNGRLSDVRVAVGSCSAVAQRLPGLEARLIGCAVGDVATLDFAAD
DNLAPLTPISDVRGSAEYRMDVAAELCRRAVVQACGGGS

Specific function: Presumed to be a dehydrogenase, but possibly an oxidase. Participates in limited purine salvage (requires aspartate) but does not support aerobic growth on purines as the sole carbon source (purine catabolism) [H]

COG id: COG1319

COG function: function code C; Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 FAD-binding PCMH-type domain [H]

Homologues:

Organism=Escherichia coli, GI1789231, Length=279, Percent_Identity=31.5412186379928, Blast_Score=119, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005107
- InterPro:   IPR016169
- InterPro:   IPR016166
- InterPro:   IPR016167
- InterPro:   IPR002346 [H]

Pfam domain/function: PF03450 CO_deh_flav_C; PF00941 FAD_binding_5 [H]

EC number: =1.17.1.4 [H]

Molecular weight: Translated: 28933; Mature: 28801

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYAMPLTLCEALALLRDGSPRVIAGCTDFFPSQAPGARAQSLLDITAISDCRGISETAD
CCCCHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
GWRIGAAVTWTDVVRAPLPPAFDALKLAAREVGSIQIQNRGTVVGNICNASPAADGVPPL
CEEECEEEEHHHHHHCCCCCHHHHHHHHHHHHCCEEECCCCCEEEECCCCCCCCCCCCCE
LALNAQVEIASSDATRTVPLSAFIQGVRKVDLARDEMVVAVIVPKVSATAQSAFLKLGSR
EEECCEEEEECCCCCCEEEHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCC
KHLVISIAMVAAVAEVQNGRLSDVRVAVGSCSAVAQRLPGLEARLIGCAVGDVATLDFAA
CEEEEHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHCCCCHHEEEEEECCCEEEEEECC
DDNLAPLTPISDVRGSAEYRMDVAAELCRRAVVQACGGGS
CCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SYAMPLTLCEALALLRDGSPRVIAGCTDFFPSQAPGARAQSLLDITAISDCRGISETAD
CCCHHHHHHHHHHHHHCCCCCEEEECHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCC
GWRIGAAVTWTDVVRAPLPPAFDALKLAAREVGSIQIQNRGTVVGNICNASPAADGVPPL
CEEECEEEEHHHHHHCCCCCHHHHHHHHHHHHCCEEECCCCCEEEECCCCCCCCCCCCCE
LALNAQVEIASSDATRTVPLSAFIQGVRKVDLARDEMVVAVIVPKVSATAQSAFLKLGSR
EEECCEEEEECCCCCCEEEHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHCCCC
KHLVISIAMVAAVAEVQNGRLSDVRVAVGSCSAVAQRLPGLEARLIGCAVGDVATLDFAA
CEEEEHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHHCCCCHHEEEEEECCCEEEEEECC
DDNLAPLTPISDVRGSAEYRMDVAAELCRRAVVQACGGGS
CCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]