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The map label for this gene is soxF [H]

Identifier: 110678831

GI number: 110678831

Start: 1441705

End: 1442973

Strand: Direct

Name: soxF [H]

Synonym: RD1_1519

Alternate gene names: 110678831

Gene position: 1441705-1442973 (Clockwise)

Preceding gene: 110678830

Following gene: 110678832

Centisome position: 34.88

GC content: 58.71

Gene sequence:

>1269_bases
ATGACACTTAAAAGACGCGCCTTTCTGGGCACGGGTGCCGCCGCAATGGGAACCCTTGCGGCGCCCGCCGTTTTTGCGGC
TGGCCACGGCAAACCACAGGTGGTTGTTGTCGGTGGGGGCGCAGGCGGTGCGACCGCTGCGCGCTATATCGCCAAGGACA
GCAAGGGTGAGGTCGGGGTCACCTTGATCGAGCCGACACGCCAGTATTACACCTGCTTCTTTTCGAACCTCTATATCGGC
GGGTTCAAAGAGATGGGGCAGCTCGGTCATTCCTATGGTGGCCTTGCTGCCAGTGGTGTGAATGTTGTGCATGATTGGGC
CACGGGCGTTGATCGCGATTCCAAGACGGTTGCGCTGGCGGGGGGCGGATCGGTTCCCTACGACAAGCTGATCCTGTCGC
CCGGCATTGATTTTGTCGAGGGCGCGGTCGAGGGATGGGACCTTTCTGCGCAAAATGCGATGCCACATGCCTATAAGGGG
GGATCGCAAACGGAATTGCTCAAGGCGCAACTGATGGCGATGCCGCAGGGCTGCACCTATGCGATGGTCGCACCGCCCAA
CCCCTACCGCTGCCCCCCCGGTCCTTATGAACGGGTGTCGATGGTGGCGCATTACCTCAAGGCGAACAATCCGACGGCCA
AGATCATTATTGCTGATCCGAAAGCCAAGTTCTCAAAACAAGCGCTGTTTGAGGAAGGCTGGGCGGATCACTACGCAGGC
ATGATCGACTGGGTGGGTGACGATTTCGGCGGCGGCAATGTAGCAGTTGACGCGGATGCGATGACCTTGTCGATCGATGG
TGAAGTCACAAATGTCGATGTCTGCAATGTCATCCCCGCCATGAAAGCGGGTCATATTGCCACGCTTGCCGGTGTGACAG
ACGGAAACTGGGCCCCTGTGAATGCGCACGATATGTCGTCAAAGGCGGATGCGGATATCTATGTTCTGGGCGATGCTGCG
CAGCAGGGGGATATGCCAAAGTCGGGCTATTCGGCCAATTCGCAGGCAAAGGTATGTGCCAATGCGGTGCGCGGTGCGCT
GACCGGGTCCAAAGTCTTCCCGGCCAAGTTCTCCAACACCTGCTGGTCGCTGATCGACACCAACAACGGCGTCAAGGTCG
GTGCGACCTATGAGGCGACCGAGGAAAAGATCGCCAAGGTTGACGGTTTCATCTCGGCGACGGGCGAGACCGCAGAACTG
CGCAAGACGACCTATGAGGAATCCGAAGGGTGGTATACCGGTATCACCGCCGACATGTTCGGAGCTTAG

Upstream 100 bases:

>100_bases
CAGATGATGGCGGGGCGGTTGTCAAATGACGAAATAGCGGCGCTGGCCGCATATTTTCAGGACCTCGAATAACGGGGCCA
AACTCTGGGAGGAGAGAACG

Downstream 100 bases:

>100_bases
GCTGAAACGGAGAGGGCTTTGATCACGCGCAAGGCTCTCTTTGACCATATCGCTGATTTGAACTGCGAAAGGGGACGGAT
ATGCGAATATTACTTTGGGC

Product: sulfide dehydrogenase flavoprotein subunit

Products: NA

Alternate protein names: FCSD; Flavocytochrome c flavoprotein subunit; FC [H]

Number of amino acids: Translated: 422; Mature: 421

Protein sequence:

>422_residues
MTLKRRAFLGTGAAAMGTLAAPAVFAAGHGKPQVVVVGGGAGGATAARYIAKDSKGEVGVTLIEPTRQYYTCFFSNLYIG
GFKEMGQLGHSYGGLAASGVNVVHDWATGVDRDSKTVALAGGGSVPYDKLILSPGIDFVEGAVEGWDLSAQNAMPHAYKG
GSQTELLKAQLMAMPQGCTYAMVAPPNPYRCPPGPYERVSMVAHYLKANNPTAKIIIADPKAKFSKQALFEEGWADHYAG
MIDWVGDDFGGGNVAVDADAMTLSIDGEVTNVDVCNVIPAMKAGHIATLAGVTDGNWAPVNAHDMSSKADADIYVLGDAA
QQGDMPKSGYSANSQAKVCANAVRGALTGSKVFPAKFSNTCWSLIDTNNGVKVGATYEATEEKIAKVDGFISATGETAEL
RKTTYEESEGWYTGITADMFGA

Sequences:

>Translated_422_residues
MTLKRRAFLGTGAAAMGTLAAPAVFAAGHGKPQVVVVGGGAGGATAARYIAKDSKGEVGVTLIEPTRQYYTCFFSNLYIG
GFKEMGQLGHSYGGLAASGVNVVHDWATGVDRDSKTVALAGGGSVPYDKLILSPGIDFVEGAVEGWDLSAQNAMPHAYKG
GSQTELLKAQLMAMPQGCTYAMVAPPNPYRCPPGPYERVSMVAHYLKANNPTAKIIIADPKAKFSKQALFEEGWADHYAG
MIDWVGDDFGGGNVAVDADAMTLSIDGEVTNVDVCNVIPAMKAGHIATLAGVTDGNWAPVNAHDMSSKADADIYVLGDAA
QQGDMPKSGYSANSQAKVCANAVRGALTGSKVFPAKFSNTCWSLIDTNNGVKVGATYEATEEKIAKVDGFISATGETAEL
RKTTYEESEGWYTGITADMFGA
>Mature_421_residues
TLKRRAFLGTGAAAMGTLAAPAVFAAGHGKPQVVVVGGGAGGATAARYIAKDSKGEVGVTLIEPTRQYYTCFFSNLYIGG
FKEMGQLGHSYGGLAASGVNVVHDWATGVDRDSKTVALAGGGSVPYDKLILSPGIDFVEGAVEGWDLSAQNAMPHAYKGG
SQTELLKAQLMAMPQGCTYAMVAPPNPYRCPPGPYERVSMVAHYLKANNPTAKIIIADPKAKFSKQALFEEGWADHYAGM
IDWVGDDFGGGNVAVDADAMTLSIDGEVTNVDVCNVIPAMKAGHIATLAGVTDGNWAPVNAHDMSSKADADIYVLGDAAQ
QGDMPKSGYSANSQAKVCANAVRGALTGSKVFPAKFSNTCWSLIDTNNGVKVGATYEATEEKIAKVDGFISATGETAELR
KTTYEESEGWYTGITADMFGA

Specific function: Unknown

COG id: COG0446

COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016156
- InterPro:   IPR013027
- InterPro:   IPR015323
- InterPro:   IPR015904
- InterPro:   IPR006311 [H]

Pfam domain/function: PF09242 FCSD-flav_bind; PF07992 Pyr_redox_2 [H]

EC number: NA

Molecular weight: Translated: 44057; Mature: 43926

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLKRRAFLGTGAAAMGTLAAPAVFAAGHGKPQVVVVGGGAGGATAARYIAKDSKGEVGV
CCCCCCEEECCCHHHHHHHHCCHHEECCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEE
TLIEPTRQYYTCFFSNLYIGGFKEMGQLGHSYGGLAASGVNVVHDWATGVDRDSKTVALA
EEECCCHHHHHHHHHCCEECCHHHHHHHCCCCCCEEECCCCEEEHHHCCCCCCCCEEEEE
GGGSVPYDKLILSPGIDFVEGAVEGWDLSAQNAMPHAYKGGSQTELLKAQLMAMPQGCTY
CCCCCCHHHEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEE
AMVAPPNPYRCPPGPYERVSMVAHYLKANNPTAKIIIADPKAKFSKQALFEEGWADHYAG
EEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCHHHHCC
MIDWVGDDFGGGNVAVDADAMTLSIDGEVTNVDVCNVIPAMKAGHIATLAGVTDGNWAPV
HHHHCCCCCCCCCEEEECCEEEEEECCCEEEEEHHHHCCCCCCCCEEEEEECCCCCCCCC
NAHDMSSKADADIYVLGDAAQQGDMPKSGYSANSQAKVCANAVRGALTGSKVFPAKFSNT
CHHCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCC
CWSLIDTNNGVKVGATYEATEEKIAKVDGFISATGETAELRKTTYEESEGWYTGITADMF
EEEEEECCCCEEEEEECHHHHHHHHHHCCEEECCCCCHHHHHHHHHCCCCEEEEECHHHC
GA
CC
>Mature Secondary Structure 
TLKRRAFLGTGAAAMGTLAAPAVFAAGHGKPQVVVVGGGAGGATAARYIAKDSKGEVGV
CCCCCEEECCCHHHHHHHHCCHHEECCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEE
TLIEPTRQYYTCFFSNLYIGGFKEMGQLGHSYGGLAASGVNVVHDWATGVDRDSKTVALA
EEECCCHHHHHHHHHCCEECCHHHHHHHCCCCCCEEECCCCEEEHHHCCCCCCCCEEEEE
GGGSVPYDKLILSPGIDFVEGAVEGWDLSAQNAMPHAYKGGSQTELLKAQLMAMPQGCTY
CCCCCCHHHEEECCCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEE
AMVAPPNPYRCPPGPYERVSMVAHYLKANNPTAKIIIADPKAKFSKQALFEEGWADHYAG
EEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHCCHHHHCC
MIDWVGDDFGGGNVAVDADAMTLSIDGEVTNVDVCNVIPAMKAGHIATLAGVTDGNWAPV
HHHHCCCCCCCCCEEEECCEEEEEECCCEEEEEHHHHCCCCCCCCEEEEEECCCCCCCCC
NAHDMSSKADADIYVLGDAAQQGDMPKSGYSANSQAKVCANAVRGALTGSKVFPAKFSNT
CHHCCCCCCCCCEEEEECCHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEECCCCCCCC
CWSLIDTNNGVKVGATYEATEEKIAKVDGFISATGETAELRKTTYEESEGWYTGITADMF
EEEEEECCCCEEEEEECHHHHHHHHHHCCEEECCCCCHHHHHHHHHCCCCEEEEECHHHC
GA
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8390993; 1649169; 7939681 [H]