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The map label for this gene is soxE

Identifier: 110678830

GI number: 110678830

Start: 1440972

End: 1441676

Strand: Direct

Name: soxE

Synonym: RD1_1518

Alternate gene names: NA

Gene position: 1440972-1441676 (Clockwise)

Preceding gene: 110678829

Following gene: 110678831

Centisome position: 34.86

GC content: 58.87

Gene sequence:

>705_bases
ATGCGCGTGTTCTTTTCGACTTTGGCCGGTCTTGCCCTTGCTTTGGCAGCGGGGGGCGCGGTGGCCAGTGGTTTGGGCGA
TGCGGACAAGGGCCGGGAGGTGTTCCGTCAATGCGCATTCTGCCATGCGGTGGGGGAGGGGGCTGAAAATGGCATCGGCC
CCCATTTGAACGGTGTGTTTGGCCGCGCGGCAGGGCGCATTGAGGGGGTGCAATACTCCAAGAGCATGATCCGGATGGGC
AATGACGGCCTGATCTGGACGGCGCAAACCCTTGACGCCTACATCGAAAACCCGCGCGCCTTGGTCTCCAAAACACGGAT
GAGTTTCCGGGGCATCAAAAACGAACAAGAACGCTCCGACCTCATGGCGTATTTGCGCCGTTACTCCGATGATCCGGGCA
ACATCCCCGAAGCCGAACCGACCGCGACGGGCACCGATCATGATCTGGACCCGGTGATCCTCGCCATTCAGGGGGATCCT
GAATACGGCGAATACCTCGCAAGTGAGTGCAAGACCTGCCACCAGACAAGTGGCGCAAACGATGGTATTCCTGGAATTAC
GCAATGGCCGACGGAGGATTTCGTAGTGGCCATGCACGCCTACAAACGCAAGCTCAGACCCCATCCCGTCATGCAGATGA
TGGCGGGGCGGTTGTCAAATGACGAAATAGCGGCGCTGGCCGCATATTTTCAGGACCTCGAATAA

Upstream 100 bases:

>100_bases
GACTACATGAGGGGCACCAAGATGGCCTTCGCCGGGCTGAGGAAAGAAGACGATCTGGTGGCGGTTGTCGAATACCTCAA
ATCGTTCGGGGACTAGGGCG

Downstream 100 bases:

>100_bases
CGGGGCCAAACTCTGGGAGGAGAGAACGATGACACTTAAAAGACGCGCCTTTCTGGGCACGGGTGCCGCCGCAATGGGAA
CCCTTGCGGCGCCCGCCGTT

Product: cytochrome c2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MRVFFSTLAGLALALAAGGAVASGLGDADKGREVFRQCAFCHAVGEGAENGIGPHLNGVFGRAAGRIEGVQYSKSMIRMG
NDGLIWTAQTLDAYIENPRALVSKTRMSFRGIKNEQERSDLMAYLRRYSDDPGNIPEAEPTATGTDHDLDPVILAIQGDP
EYGEYLASECKTCHQTSGANDGIPGITQWPTEDFVVAMHAYKRKLRPHPVMQMMAGRLSNDEIAALAAYFQDLE

Sequences:

>Translated_234_residues
MRVFFSTLAGLALALAAGGAVASGLGDADKGREVFRQCAFCHAVGEGAENGIGPHLNGVFGRAAGRIEGVQYSKSMIRMG
NDGLIWTAQTLDAYIENPRALVSKTRMSFRGIKNEQERSDLMAYLRRYSDDPGNIPEAEPTATGTDHDLDPVILAIQGDP
EYGEYLASECKTCHQTSGANDGIPGITQWPTEDFVVAMHAYKRKLRPHPVMQMMAGRLSNDEIAALAAYFQDLE
>Mature_234_residues
MRVFFSTLAGLALALAAGGAVASGLGDADKGREVFRQCAFCHAVGEGAENGIGPHLNGVFGRAAGRIEGVQYSKSMIRMG
NDGLIWTAQTLDAYIENPRALVSKTRMSFRGIKNEQERSDLMAYLRRYSDDPGNIPEAEPTATGTDHDLDPVILAIQGDP
EYGEYLASECKTCHQTSGANDGIPGITQWPTEDFVVAMHAYKRKLRPHPVMQMMAGRLSNDEIAALAAYFQDLE

Specific function: Cytochrome c2 is found mainly in purple, non-sulfur, photosynthetic bacteria where it functions as the electron donor to the oxidized bacteriochlorophyll in the photophosphorylation pathway. However, it may also have a role in the respiratory chain and is

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=108, Percent_Identity=39.8148148148148, Blast_Score=97, Evalue=1e-20,
Organism=Caenorhabditis elegans, GI17566554, Length=111, Percent_Identity=38.7387387387387, Blast_Score=84, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17539604, Length=101, Percent_Identity=40.5940594059406, Blast_Score=84, Evalue=6e-17,
Organism=Saccharomyces cerevisiae, GI6320796, Length=103, Percent_Identity=35.9223300970874, Blast_Score=89, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6322508, Length=103, Percent_Identity=35.9223300970874, Blast_Score=87, Evalue=2e-18,
Organism=Drosophila melanogaster, GI17137204, Length=104, Percent_Identity=39.4230769230769, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI17137228, Length=102, Percent_Identity=40.1960784313725, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 25370; Mature: 25370

Theoretical pI: Translated: 5.11; Mature: 5.11

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVFFSTLAGLALALAAGGAVASGLGDADKGREVFRQCAFCHAVGEGAENGIGPHLNGVF
CCHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
GRAAGRIEGVQYSKSMIRMGNDGLIWTAQTLDAYIENPRALVSKTRMSFRGIKNEQERSD
HHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHH
LMAYLRRYSDDPGNIPEAEPTATGTDHDLDPVILAIQGDPEYGEYLASECKTCHQTSGAN
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCC
DGIPGITQWPTEDFVVAMHAYKRKLRPHPVMQMMAGRLSNDEIAALAAYFQDLE
CCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MRVFFSTLAGLALALAAGGAVASGLGDADKGREVFRQCAFCHAVGEGAENGIGPHLNGVF
CCHHHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHH
GRAAGRIEGVQYSKSMIRMGNDGLIWTAQTLDAYIENPRALVSKTRMSFRGIKNEQERSD
HHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHH
LMAYLRRYSDDPGNIPEAEPTATGTDHDLDPVILAIQGDPEYGEYLASECKTCHQTSGAN
HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCC
DGIPGITQWPTEDFVVAMHAYKRKLRPHPVMQMMAGRLSNDEIAALAAYFQDLE
CCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA