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The map label for this gene is soxD

Identifier: 110678829

GI number: 110678829

Start: 1439930

End: 1440967

Strand: Direct

Name: soxD

Synonym: RD1_1517

Alternate gene names: NA

Gene position: 1439930-1440967 (Clockwise)

Preceding gene: 110678828

Following gene: 110678830

Centisome position: 34.84

GC content: 58.29

Gene sequence:

>1038_bases
ATGTCGAAGTTTCTTAAATCAACCGTTGCCCTGACCGCGCTGTCCCTGATGGCCGCACCTGCGATGGCGGACAGGCTCGG
CCTTGGCCGGGCGGCACTGCCCGAGGAAATCGCCGCGTGGGATGGGGATGTGCGCCCCGACGGCACTGGGCTGCCCGTGG
GGTCAGGGGATGCGATCATCGGCGAGGAAATATTTGCCACCCAATGCGCGGCCTGTCATGGCGATTTTGCCGAAGGCATC
GACAATTGGCCCAAACTGGCCGGTGGGATCGACACGCTTTATCACGACGATCCGCTCAAGACGGTCGGGTCCTATTGGCC
CTATCTGTCGACGGCTTTTGACTATATCAAACGCTCGATGCCCTATGGCAACGCAGGGACGCTGAGCGATGATGAGACAT
ATGCGCTGCTTGCCTATATTCTCTATTCAAACGATCTGATTGACGATGACTTTGTGCTGTCCAATGAGACGTTTTTCGAC
GTTGAGATGCCGAACGCGGATGGGTTCATCATCGATGACCGGGCCGAGACGGAATATGCGCAATGGCGCGGTGAGCCCTG
CATGGAAAACTGCAAACCCGAACCTGTAAGCGTCACCATGCGCGCCATGGTCCTTGACGTCACACCGCAGGAAGAGGCTG
AGGCCCCTGCCGAGGGGACGATTGTCGCTGAGAGCGCGGCACAGGCCGAACCCGAGGTCGTCGCAGCATTATTCGATGCA
GACCTTGCCGAAGAGGGCGAGAAGGTGTTTCGCAAGTGCAAATCCTGTCATCAGGTGGGGGAGGATGCGAAAAACCGTGT
CGGTCCGATCCTGAACGGAATTGTCGGCAAGCCTGCCGGTGCGGTCGAGGGTTTCAGGTATTCCAAACCCATGGCCGCTG
CCGGTGAGGAAGGATTGGTCTGGAGCGAAGCCGAACTGATCGCCTTTCTGGCCAATCCGAAAGACTACATGAGGGGCACC
AAGATGGCCTTCGCCGGGCTGAGGAAAGAAGACGATCTGGTGGCGGTTGTCGAATACCTCAAATCGTTCGGGGACTAG

Upstream 100 bases:

>100_bases
CCCACCAAGGCGCAGCTGCGCGAAGTGCGCGGATTGAATTCGATTTACCACAACAACTGCATCCAGACATGGCTGGTACG
CGCGAATGGAGAGACTGAAA

Downstream 100 bases:

>100_bases
GGCGATGCGCGTGTTCTTTTCGACTTTGGCCGGTCTTGCCCTTGCTTTGGCAGCGGGGGGCGCGGTGGCCAGTGGTTTGG
GCGATGCGGACAAGGGCCGG

Product: diheme cytochrome c SoxD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 345; Mature: 344

Protein sequence:

>345_residues
MSKFLKSTVALTALSLMAAPAMADRLGLGRAALPEEIAAWDGDVRPDGTGLPVGSGDAIIGEEIFATQCAACHGDFAEGI
DNWPKLAGGIDTLYHDDPLKTVGSYWPYLSTAFDYIKRSMPYGNAGTLSDDETYALLAYILYSNDLIDDDFVLSNETFFD
VEMPNADGFIIDDRAETEYAQWRGEPCMENCKPEPVSVTMRAMVLDVTPQEEAEAPAEGTIVAESAAQAEPEVVAALFDA
DLAEEGEKVFRKCKSCHQVGEDAKNRVGPILNGIVGKPAGAVEGFRYSKPMAAAGEEGLVWSEAELIAFLANPKDYMRGT
KMAFAGLRKEDDLVAVVEYLKSFGD

Sequences:

>Translated_345_residues
MSKFLKSTVALTALSLMAAPAMADRLGLGRAALPEEIAAWDGDVRPDGTGLPVGSGDAIIGEEIFATQCAACHGDFAEGI
DNWPKLAGGIDTLYHDDPLKTVGSYWPYLSTAFDYIKRSMPYGNAGTLSDDETYALLAYILYSNDLIDDDFVLSNETFFD
VEMPNADGFIIDDRAETEYAQWRGEPCMENCKPEPVSVTMRAMVLDVTPQEEAEAPAEGTIVAESAAQAEPEVVAALFDA
DLAEEGEKVFRKCKSCHQVGEDAKNRVGPILNGIVGKPAGAVEGFRYSKPMAAAGEEGLVWSEAELIAFLANPKDYMRGT
KMAFAGLRKEDDLVAVVEYLKSFGD
>Mature_344_residues
SKFLKSTVALTALSLMAAPAMADRLGLGRAALPEEIAAWDGDVRPDGTGLPVGSGDAIIGEEIFATQCAACHGDFAEGID
NWPKLAGGIDTLYHDDPLKTVGSYWPYLSTAFDYIKRSMPYGNAGTLSDDETYALLAYILYSNDLIDDDFVLSNETFFDV
EMPNADGFIIDDRAETEYAQWRGEPCMENCKPEPVSVTMRAMVLDVTPQEEAEAPAEGTIVAESAAQAEPEVVAALFDAD
LAEEGEKVFRKCKSCHQVGEDAKNRVGPILNGIVGKPAGAVEGFRYSKPMAAAGEEGLVWSEAELIAFLANPKDYMRGTK
MAFAGLRKEDDLVAVVEYLKSFGD

Specific function: Cytochrome c2 is found mainly in purple, non-sulfur, photosynthetic bacteria where it functions as the electron donor to the oxidized bacteriochlorophyll in the photophosphorylation pathway. However, it may also have a role in the respiratory chain and is

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=99, Percent_Identity=39.3939393939394, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17566554, Length=98, Percent_Identity=41.8367346938776, Blast_Score=87, Evalue=9e-18,
Organism=Caenorhabditis elegans, GI17539604, Length=99, Percent_Identity=42.4242424242424, Blast_Score=87, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6322508, Length=105, Percent_Identity=40, Blast_Score=86, Evalue=1e-17,
Organism=Saccharomyces cerevisiae, GI6320796, Length=104, Percent_Identity=39.4230769230769, Blast_Score=84, Evalue=3e-17,
Organism=Drosophila melanogaster, GI17137228, Length=100, Percent_Identity=42, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI17137204, Length=101, Percent_Identity=40.5940594059406, Blast_Score=85, Evalue=6e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 37228; Mature: 37097

Theoretical pI: Translated: 4.04; Mature: 4.04

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKFLKSTVALTALSLMAAPAMADRLGLGRAALPEEIAAWDGDVRPDGTGLPVGSGDAII
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHH
GEEIFATQCAACHGDFAEGIDNWPKLAGGIDTLYHDDPLKTVGSYWPYLSTAFDYIKRSM
HHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
PYGNAGTLSDDETYALLAYILYSNDLIDDDFVLSNETFFDVEMPNADGFIIDDRAETEYA
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCEEEEEECCCCCCEEECCCCCHHHH
QWRGEPCMENCKPEPVSVTMRAMVLDVTPQEEAEAPAEGTIVAESAAQAEPEVVAALFDA
HHCCCHHHHCCCCCCHHEEEEEEEEECCCCHHHCCCCCCEEEECCHHHCCHHHHHHHHHH
DLAEEGEKVFRKCKSCHQVGEDAKNRVGPILNGIVGKPAGAVEGFRYSKPMAAAGEEGLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCE
WSEAELIAFLANPKDYMRGTKMAFAGLRKEDDLVAVVEYLKSFGD
ECHHHHHHEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
SKFLKSTVALTALSLMAAPAMADRLGLGRAALPEEIAAWDGDVRPDGTGLPVGSGDAII
CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHH
GEEIFATQCAACHGDFAEGIDNWPKLAGGIDTLYHDDPLKTVGSYWPYLSTAFDYIKRSM
HHHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
PYGNAGTLSDDETYALLAYILYSNDLIDDDFVLSNETFFDVEMPNADGFIIDDRAETEYA
CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCEEECCCEEEEEECCCCCCEEECCCCCHHHH
QWRGEPCMENCKPEPVSVTMRAMVLDVTPQEEAEAPAEGTIVAESAAQAEPEVVAALFDA
HHCCCHHHHCCCCCCHHEEEEEEEEECCCCHHHCCCCCCEEEECCHHHCCHHHHHHHHHH
DLAEEGEKVFRKCKSCHQVGEDAKNRVGPILNGIVGKPAGAVEGFRYSKPMAAAGEEGLV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCCCCCCCCCCCCE
WSEAELIAFLANPKDYMRGTKMAFAGLRKEDDLVAVVEYLKSFGD
ECHHHHHHEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA