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The map label for this gene is aphA [H]

Identifier: 110678800

GI number: 110678800

Start: 1412798

End: 1413538

Strand: Reverse

Name: aphA [H]

Synonym: RD1_1488

Alternate gene names: 110678800

Gene position: 1413538-1412798 (Counterclockwise)

Preceding gene: 110678801

Following gene: 110678799

Centisome position: 34.2

GC content: 50.88

Gene sequence:

>741_bases
ATGATCAATTCTTGTGAAGGTCGTCAGTATACTGTCATGTCGAATGTGGCCGTTGAGCACAATAGTTCAAAGGACTTTGA
AGACCTCGTGTATTTACTGAGCCATGATGTCGGCAATTCGGTTCGGGCACTGCTGGAAGTGCCGCAGTGGATAAAAGAGG
ACTTTGTTTCAGCCGGGCATTCGATGTCCAAACCAATGGCTGAGAATTTTGACCTGTTGGAAACACAGACGCGACGCCTC
GATCGGATGCTCTCGGACCTTCTCGCTTACTCAAGGGTCGGCAGGCTACAGTCGACGCGACTGGTTGATTTTCACGAGGC
GCTGGACCTTGTACTTGACCAAGTGTCGCTCCCCAGGTCTTTTCGAGTGACGCACGACTTTCAATGCAAGAGTATGAAGT
TTGGTGAACATGACATGCTGACGCTTTTGTCGGCCCTGATATCCAACGCCATCAAACACCATGATAAATCAAGCGGTCAC
ATTCATCTGAGCTCACTTACCTTGGCAGGCGAAATCGTAATCTGCGTTCAAGATGACGGGCCGGGCATCGCAGAGAAGTA
CCGCGACCGTGTGTTCGAAGCGATGTCGACGCTTAAACCGCGTGACGAAGTTGAGGGGAGCGGCATGGGATTGGCTATCG
TACGCAAGATAGTTCACAACCACGGCGGCGAACTTGCGTGGATTGAACCGGATGCCCAGTTTAACACTGCCTTGGAGATG
CGTTTCAAAATAGGGCTTTAA

Upstream 100 bases:

>100_bases
CTCGCACTGAGAGACCTGAGTTGATGCAAACGCAGGCCCATTAATCCGGTTTTAAGGCGCTCAGAGGTATACTGACACCA
GTCTGTTGCAAAGGTATTCC

Downstream 100 bases:

>100_bases
CTGGTTGCACCCGTCACTCAATGCGATTGGACCGACAAGCGACGCTTTGTCTGAAATGATCAACCGACCTTCGAGAAGAC
AACTTGCCCGGGTGGCCGTT

Product: histidine kinase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MINSCEGRQYTVMSNVAVEHNSSKDFEDLVYLLSHDVGNSVRALLEVPQWIKEDFVSAGHSMSKPMAENFDLLETQTRRL
DRMLSDLLAYSRVGRLQSTRLVDFHEALDLVLDQVSLPRSFRVTHDFQCKSMKFGEHDMLTLLSALISNAIKHHDKSSGH
IHLSSLTLAGEIVICVQDDGPGIAEKYRDRVFEAMSTLKPRDEVEGSGMGLAIVRKIVHNHGGELAWIEPDAQFNTALEM
RFKIGL

Sequences:

>Translated_246_residues
MINSCEGRQYTVMSNVAVEHNSSKDFEDLVYLLSHDVGNSVRALLEVPQWIKEDFVSAGHSMSKPMAENFDLLETQTRRL
DRMLSDLLAYSRVGRLQSTRLVDFHEALDLVLDQVSLPRSFRVTHDFQCKSMKFGEHDMLTLLSALISNAIKHHDKSSGH
IHLSSLTLAGEIVICVQDDGPGIAEKYRDRVFEAMSTLKPRDEVEGSGMGLAIVRKIVHNHGGELAWIEPDAQFNTALEM
RFKIGL
>Mature_246_residues
MINSCEGRQYTVMSNVAVEHNSSKDFEDLVYLLSHDVGNSVRALLEVPQWIKEDFVSAGHSMSKPMAENFDLLETQTRRL
DRMLSDLLAYSRVGRLQSTRLVDFHEALDLVLDQVSLPRSFRVTHDFQCKSMKFGEHDMLTLLSALISNAIKHHDKSSGH
IHLSSLTLAGEIVICVQDDGPGIAEKYRDRVFEAMSTLKPRDEVEGSGMGLAIVRKIVHNHGGELAWIEPDAQFNTALEM
RFKIGL

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 histidine kinase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR003018
- InterPro:   IPR013654
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082 [H]

Pfam domain/function: PF01590 GAF; PF02518 HATPase_c; PF00512 HisKA; PF08446 PAS_2; PF00360 Phytochrome [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 27680; Mature: 27680

Theoretical pI: Translated: 6.08; Mature: 6.08

Prosite motif: PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINSCEGRQYTVMSNVAVEHNSSKDFEDLVYLLSHDVGNSVRALLEVPQWIKEDFVSAGH
CCCCCCCCEEEEEECEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
SMSKPMAENFDLLETQTRRLDRMLSDLLAYSRVGRLQSTRLVDFHEALDLVLDQVSLPRS
CCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
FRVTHDFQCKSMKFGEHDMLTLLSALISNAIKHHDKSSGHIHLSSLTLAGEIVICVQDDG
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECEEEEEEECCC
PGIAEKYRDRVFEAMSTLKPRDEVEGSGMGLAIVRKIVHNHGGELAWIEPDAQFNTALEM
CCHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHEEE
RFKIGL
EEEECC
>Mature Secondary Structure
MINSCEGRQYTVMSNVAVEHNSSKDFEDLVYLLSHDVGNSVRALLEVPQWIKEDFVSAGH
CCCCCCCCEEEEEECEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
SMSKPMAENFDLLETQTRRLDRMLSDLLAYSRVGRLQSTRLVDFHEALDLVLDQVSLPRS
CCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCC
FRVTHDFQCKSMKFGEHDMLTLLSALISNAIKHHDKSSGHIHLSSLTLAGEIVICVQDDG
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECEEEEEEECCC
PGIAEKYRDRVFEAMSTLKPRDEVEGSGMGLAIVRKIVHNHGGELAWIEPDAQFNTALEM
CCHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCHHEEE
RFKIGL
EEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]