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The map label for this gene is yiaN [C]

Identifier: 110678788

GI number: 110678788

Start: 1400878

End: 1402194

Strand: Reverse

Name: yiaN [C]

Synonym: RD1_1476

Alternate gene names: 110678788

Gene position: 1402194-1400878 (Counterclockwise)

Preceding gene: 110678789

Following gene: 110678787

Centisome position: 33.93

GC content: 58.24

Gene sequence:

>1317_bases
ATGGACCCGATCCTGCTCGGCGGCATTGTCGCACTCGCCACTATTCTCGTGCTGTTTTCCGGGGTGTCGGTGGCCCTTGG
GCTGCTGATTGTATCCACCGGCTTCTTGCTGATCTTCGATGGGCTGCGCTCGCTTGAACTGATCCCTGAAATTCTGTTTG
GCAAGCTTGACAATTTTGCCCTGCTGGCGATCCCGATGTTCATCATCATGGGCTCTTCCATCGCATCGACGCGGGCGGGG
GCTGACCTTTATGAGGCGCTTGAACGCTGGCTGACCCGCGTGCCGGGCGGGCTGGTGATTTCCAACCTCGGGGCCTGCGC
GCTCTTTTCGGCCATGTCGGGATCAAGCCCTGCGACCTGTGCTGCCATCGGCAAGATGGGCATCCCCGAGATGCGCAAAC
GCGGCTATCCCGACGGGGTCGCGGCGGGGTCCATCGCGGCCGGGGGAACACTCGGTATTCTAATCCCGCCGTCAGTCACG
ATGATTGTCTACGGCATCGCGACCGAAACCTCGATTGGTCGTTTGTTTCTGGCCGGCGTGATCCCGGGGCTTTTGCTAGT
GGGCCTTTTCATGGCGTGGTCGCTGTATTCCACATGGAAAAGCGGCGACCAGATGCTGCTGGCGTCGCGCGTCTACAGTT
GGAAGGAAAAGTTTGAAATCCTGCCGCGCGTCCTGCCGTTCCTCGCCATCATCGTGGGCGTTCTCTATGCCATGTATGGC
GGCATCGCGACACCGTCCGAGACGGCCGCCGTCGGTGCATTGCTCTGTCTGTTGATCGCGATCATCATTTACAAACTGTG
GAACCCCAAAGACCTGTGGGTGGTGCTGCGCGACAGTACCAAGGAAAGCGTGATGATCATGTTCATCATCGCAGCCGCCG
GTGTCTTTTCCTACATGCTTTCAAGCCTCTTCATCACGCAAGCCATCGCGGAATGGATCGGGACACTGGATGTAAACCGC
TGGGTTCTCATGGGTTTTGTGATGCTGTTCCTGCTGGTGGCCGGGTTCTTCCTGCCGCCGGTGGCGGTGATCCTGATGGC
CGCACCGATCCTGCTTCCAATCATTACCACGGCTGGTTTTGATCCCATCTGGTTTGCGGTGGTTCTGACCATCAATATGG
AGATCGGATTGATATCGCCGCCCGTGGGTCTGAACCTCTATGTGATCAACGGCATCGCGCCGGATATTTCGCTCAAGACG
ATCCTCAAGGGGTCCCTGCCCTTCGTGGCCTGCATGGTCATTGCGATCATTCTGCTGTGCTTCTTTCCGGGCATCGCGAC
ATGGCTGCCTGATGTGATCATGGGTGAGGCCGTATGA

Upstream 100 bases:

>100_bases
CGATCCCTGTCGGGTTTGGCCTGTTCCTGCTGCAACTGATCGCTGATCTGGTCGCAGTGCTGCTGAAAATCGACACCCCC
TTTGGACTGGAGGACGAATA

Downstream 100 bases:

>100_bases
GCTATTTCGGCGGATTGATCTCGACCCTTTTTGAGCGGCGATACCAGCAGGCTCTCTCGGATGAGGTGGACAGCCGGACA
ACCTGCGAACTCTGCGAAGC

Product: TRAP dicarboxylate family transporter DctM subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 438; Mature: 438

Protein sequence:

>438_residues
MDPILLGGIVALATILVLFSGVSVALGLLIVSTGFLLIFDGLRSLELIPEILFGKLDNFALLAIPMFIIMGSSIASTRAG
ADLYEALERWLTRVPGGLVISNLGACALFSAMSGSSPATCAAIGKMGIPEMRKRGYPDGVAAGSIAAGGTLGILIPPSVT
MIVYGIATETSIGRLFLAGVIPGLLLVGLFMAWSLYSTWKSGDQMLLASRVYSWKEKFEILPRVLPFLAIIVGVLYAMYG
GIATPSETAAVGALLCLLIAIIIYKLWNPKDLWVVLRDSTKESVMIMFIIAAAGVFSYMLSSLFITQAIAEWIGTLDVNR
WVLMGFVMLFLLVAGFFLPPVAVILMAAPILLPIITTAGFDPIWFAVVLTINMEIGLISPPVGLNLYVINGIAPDISLKT
ILKGSLPFVACMVIAIILLCFFPGIATWLPDVIMGEAV

Sequences:

>Translated_438_residues
MDPILLGGIVALATILVLFSGVSVALGLLIVSTGFLLIFDGLRSLELIPEILFGKLDNFALLAIPMFIIMGSSIASTRAG
ADLYEALERWLTRVPGGLVISNLGACALFSAMSGSSPATCAAIGKMGIPEMRKRGYPDGVAAGSIAAGGTLGILIPPSVT
MIVYGIATETSIGRLFLAGVIPGLLLVGLFMAWSLYSTWKSGDQMLLASRVYSWKEKFEILPRVLPFLAIIVGVLYAMYG
GIATPSETAAVGALLCLLIAIIIYKLWNPKDLWVVLRDSTKESVMIMFIIAAAGVFSYMLSSLFITQAIAEWIGTLDVNR
WVLMGFVMLFLLVAGFFLPPVAVILMAAPILLPIITTAGFDPIWFAVVLTINMEIGLISPPVGLNLYVINGIAPDISLKT
ILKGSLPFVACMVIAIILLCFFPGIATWLPDVIMGEAV
>Mature_438_residues
MDPILLGGIVALATILVLFSGVSVALGLLIVSTGFLLIFDGLRSLELIPEILFGKLDNFALLAIPMFIIMGSSIASTRAG
ADLYEALERWLTRVPGGLVISNLGACALFSAMSGSSPATCAAIGKMGIPEMRKRGYPDGVAAGSIAAGGTLGILIPPSVT
MIVYGIATETSIGRLFLAGVIPGLLLVGLFMAWSLYSTWKSGDQMLLASRVYSWKEKFEILPRVLPFLAIIVGVLYAMYG
GIATPSETAAVGALLCLLIAIIIYKLWNPKDLWVVLRDSTKESVMIMFIIAAAGVFSYMLSSLFITQAIAEWIGTLDVNR
WVLMGFVMLFLLVAGFFLPPVAVILMAAPILLPIITTAGFDPIWFAVVLTINMEIGLISPPVGLNLYVINGIAPDISLKT
ILKGSLPFVACMVIAIILLCFFPGIATWLPDVIMGEAV

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TRAP transporter large permease family [H]

Homologues:

Organism=Escherichia coli, GI48994950, Length=406, Percent_Identity=28.3251231527094, Blast_Score=147, Evalue=1e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010656
- InterPro:   IPR004681 [H]

Pfam domain/function: PF06808 DctM [H]

EC number: NA

Molecular weight: Translated: 46612; Mature: 46612

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDPILLGGIVALATILVLFSGVSVALGLLIVSTGFLLIFDGLRSLELIPEILFGKLDNFA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
LLAIPMFIIMGSSIASTRAGADLYEALERWLTRVPGGLVISNLGACALFSAMSGSSPATC
HHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHH
AAIGKMGIPEMRKRGYPDGVAAGSIAAGGTLGILIPPSVTMIVYGIATETSIGRLFLAGV
HHHHCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEHHCCCHHHHHHHHHH
IPGLLLVGLFMAWSLYSTWKSGDQMLLASRVYSWKEKFEILPRVLPFLAIIVGVLYAMYG
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GIATPSETAAVGALLCLLIAIIIYKLWNPKDLWVVLRDSTKESVMIMFIIAAAGVFSYML
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
SSLFITQAIAEWIGTLDVNRWVLMGFVMLFLLVAGFFLPPVAVILMAAPILLPIITTAGF
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DPIWFAVVLTINMEIGLISPPVGLNLYVINGIAPDISLKTILKGSLPFVACMVIAIILLC
CHHHHHHHHHHCCEEEEECCCCCCEEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHH
FFPGIATWLPDVIMGEAV
HHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MDPILLGGIVALATILVLFSGVSVALGLLIVSTGFLLIFDGLRSLELIPEILFGKLDNFA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
LLAIPMFIIMGSSIASTRAGADLYEALERWLTRVPGGLVISNLGACALFSAMSGSSPATC
HHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHH
AAIGKMGIPEMRKRGYPDGVAAGSIAAGGTLGILIPPSVTMIVYGIATETSIGRLFLAGV
HHHHCCCCHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEHHCCCHHHHHHHHHH
IPGLLLVGLFMAWSLYSTWKSGDQMLLASRVYSWKEKFEILPRVLPFLAIIVGVLYAMYG
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
GIATPSETAAVGALLCLLIAIIIYKLWNPKDLWVVLRDSTKESVMIMFIIAAAGVFSYML
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHH
SSLFITQAIAEWIGTLDVNRWVLMGFVMLFLLVAGFFLPPVAVILMAAPILLPIITTAGF
HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
DPIWFAVVLTINMEIGLISPPVGLNLYVINGIAPDISLKTILKGSLPFVACMVIAIILLC
CHHHHHHHHHHCCEEEEECCCCCCEEEEEECCCCCCHHHHHHCCCCHHHHHHHHHHHHHH
FFPGIATWLPDVIMGEAV
HHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]