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The map label for this gene is 110678789

Identifier: 110678789

GI number: 110678789

Start: 1402194

End: 1402796

Strand: Reverse

Name: 110678789

Synonym: RD1_1477

Alternate gene names: NA

Gene position: 1402796-1402194 (Counterclockwise)

Preceding gene: 110678790

Following gene: 110678788

Centisome position: 33.94

GC content: 56.05

Gene sequence:

>603_bases
ATGCAGCGGTCGCCGCAATGCTCCGAAACTCTTACTTCTAAAAGGAAAATCGACATGGCTGGTCAAAGCTCAGCCGTCAC
CGCGCGTACGGGCAATAACCCTTTTCTGCGCGGCGTGGCGGTCCTATCTACCCTCGCCGGTTGGTGCTCGGCGGCCATGA
TCGTTGCGGCGGTCGCCATCACCTGCCAGATGATTTTCGTGCGTTTCGTGTTGAACCAATCGACGGTCTGGCAAACCGAA
GCCGTCATTTATCTTGCGATCGGTGCCACATTGGTCGGGCTGCCCTACGTGCAGCAACTGCGCGGACATGTGAATGTCGA
CCTGATCCCACTCGCGCTGTCACCGGGTGCGCGTTACTACATGTATATCCTCACGATGACACTTTCGATTGTGATGGTCG
CAATCGTTCTGTTCTACGGATTTGAGCATTGGCATCTCGCCTACGAGCGCAACTGGAAATCCGACACCATCTGGGCGGTC
AGGCTCTGGATTCCCTATCTCGCGATCCCTGTCGGGTTTGGCCTGTTCCTGCTGCAACTGATCGCTGATCTGGTCGCAGT
GCTGCTGAAAATCGACACCCCCTTTGGACTGGAGGACGAATAA

Upstream 100 bases:

>100_bases
GAGACCTCTTACAAGGCCTTCGTGGAGGATGTGCCAGACGGGCAGGCCTTGCTCGATATGGCGCTGGCCGTCGAGTAACC
CGGCATAGGGCGACCGCGCA

Downstream 100 bases:

>100_bases
TGGACCCGATCCTGCTCGGCGGCATTGTCGCACTCGCCACTATTCTCGTGCTGTTTTCCGGGGTGTCGGTGGCCCTTGGG
CTGCTGATTGTATCCACCGG

Product: hypothetical protein

Products: NA

Alternate protein names: TRAP Transporter; TRAP Transporter Small Transmembrane Protein; TRAP Dicarboxylate Transporter DctM Subunit; TRAP Transporter DctQ-Like Membrane Protein; C4-Dicarboxylate Transporter Small Subunit

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MQRSPQCSETLTSKRKIDMAGQSSAVTARTGNNPFLRGVAVLSTLAGWCSAAMIVAAVAITCQMIFVRFVLNQSTVWQTE
AVIYLAIGATLVGLPYVQQLRGHVNVDLIPLALSPGARYYMYILTMTLSIVMVAIVLFYGFEHWHLAYERNWKSDTIWAV
RLWIPYLAIPVGFGLFLLQLIADLVAVLLKIDTPFGLEDE

Sequences:

>Translated_200_residues
MQRSPQCSETLTSKRKIDMAGQSSAVTARTGNNPFLRGVAVLSTLAGWCSAAMIVAAVAITCQMIFVRFVLNQSTVWQTE
AVIYLAIGATLVGLPYVQQLRGHVNVDLIPLALSPGARYYMYILTMTLSIVMVAIVLFYGFEHWHLAYERNWKSDTIWAV
RLWIPYLAIPVGFGLFLLQLIADLVAVLLKIDTPFGLEDE
>Mature_200_residues
MQRSPQCSETLTSKRKIDMAGQSSAVTARTGNNPFLRGVAVLSTLAGWCSAAMIVAAVAITCQMIFVRFVLNQSTVWQTE
AVIYLAIGATLVGLPYVQQLRGHVNVDLIPLALSPGARYYMYILTMTLSIVMVAIVLFYGFEHWHLAYERNWKSDTIWAV
RLWIPYLAIPVGFGLFLLQLIADLVAVLLKIDTPFGLEDE

Specific function: Unknown

COG id: COG3090

COG function: function code G; TRAP-type C4-dicarboxylate transport system, small permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22214; Mature: 22214

Theoretical pI: Translated: 8.05; Mature: 8.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQRSPQCSETLTSKRKIDMAGQSSAVTARTGNNPFLRGVAVLSTLAGWCSAAMIVAAVAI
CCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TCQMIFVRFVLNQSTVWQTEAVIYLAIGATLVGLPYVQQLRGHVNVDLIPLALSPGARYY
HHHHHHHHHHHCCCCCCHHHHHHEEEHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHH
MYILTMTLSIVMVAIVLFYGFEHWHLAYERNWKSDTIWAVRLWIPYLAIPVGFGLFLLQL
HHHHHHHHHHHHHHHHHHHCCHHHEEHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IADLVAVLLKIDTPFGLEDE
HHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MQRSPQCSETLTSKRKIDMAGQSSAVTARTGNNPFLRGVAVLSTLAGWCSAAMIVAAVAI
CCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
TCQMIFVRFVLNQSTVWQTEAVIYLAIGATLVGLPYVQQLRGHVNVDLIPLALSPGARYY
HHHHHHHHHHHCCCCCCHHHHHHEEEHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHH
MYILTMTLSIVMVAIVLFYGFEHWHLAYERNWKSDTIWAVRLWIPYLAIPVGFGLFLLQL
HHHHHHHHHHHHHHHHHHHCCHHHEEHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IADLVAVLLKIDTPFGLEDE
HHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA