Click here to switch to the map view.

The map label for this gene is mcd

Identifier: 110678787

GI number: 110678787

Start: 1399637

End: 1400881

Strand: Reverse

Name: mcd

Synonym: RD1_1475

Alternate gene names: NA

Gene position: 1400881-1399637 (Counterclockwise)

Preceding gene: 110678788

Following gene: 110678786

Centisome position: 33.89

GC content: 56.14

Gene sequence:

>1245_bases
ATGAGCTATTTCGGCGGATTGATCTCGACCCTTTTTGAGCGGCGATACCAGCAGGCTCTCTCGGATGAGGTGGACAGCCG
GACAACCTGCGAACTCTGCGAAGCGCTGCTGAGCAGCCACGGCGAAGTTTCAGGTGTCACGCTGGCGCGCAACCTGCTGG
ATCGCTACGCCGCAATGACTGAGGCAGAAAAAACCGCCCTTTTTGGCTTCATGGCGCATGATCTTGAGATTGACCCGGAC
GCGGTCACACACACGCTGGAAGCCTATAAGAACAACCCGGGCAAAGACACATATCGTGCCTTTGCCGCAGCTTGCGAACC
TCGGCGTCAGGAATTGGCGCGACGTCTGAATCAGGTGCCGGGGGCGACGGGACAGTTGGTGCAGATGCGCAAAGACCTGT
TGCGGATGATGAAAGACCACCCCGATCTCGAACCCGTTGATGTGGATTTCAAACATCTGTTTTCGTCATGGTTCAATCGC
GGCTTTCTCGTTTTGCGCCCGATTGACTGGTCCAGCCCGGCGAATATCCTTGAACAGATCATCGCCTATGAAGCCGTGCA
TGAAATTGACAGCTGGGATGAACTGCGGCGCAGGCTGCAACCGAGCGACAGACGCTGCTTTGGTTTCTTTCACCCCTCAA
TGGCGGATGAGCCGTTAATTTTTGTCGAGGTCGCATTGACCGAGGGTGTGCCCAGTTCAGTGCAGGATTTGCTGGCCGAT
GAACGGGATGTGATCACGGCGCAGGACGCAGACACGGCCGTCTTCTATTCCATCTCGAACTGCCAGTCGGGGCTGGCGGG
TATTTCATTCGGCAACTCACTGATCAAACAAGTTGTCGCTGATCTGGCCAAGGATTTGCCGGGGCTTACGACCTTCGTTA
CGCTGTCCCCGATCCCCGGATTGAACAGATGGCTTCAGGATGCCGATATCGACGCGCTCAAAGACGCCGACACGCAGGCC
CTCGCAGCGCACTATCTGCTGGAAGCCAAGCGATCAGACGGCATGCCCTTTGACCCGGTCGCACGCTTCCACCTTGGCAA
TGGCGCTTTGGTCCATGCAGTTCACGCGGAGGCAGATGTTTCACCGAACGGGCGCAAACAATCCAACGGCGCGATGGTCA
ACTATCTTTACGACCTCTCTCAAATCTCGCAAAACCACGAGAAATTCGTCGGTGACAAGATCGTCGTCGCCTCCACAACC
GTCAAAGCACTCAGCGGATCAGTGACCACAAGTTTAGGAACCTGA

Upstream 100 bases:

>100_bases
CCCTGCCCTTCGTGGCCTGCATGGTCATTGCGATCATTCTGCTGTGCTTCTTTCCGGGCATCGCGACATGGCTGCCTGAT
GTGATCATGGGTGAGGCCGT

Downstream 100 bases:

>100_bases
ACATGGCAAACCCTCTCTATGATACATTTTTCGGGCGTCATCAGGGAAAGGAGACCCCTTTTCTGGAATTGGTGGATGGT
GCAACGATCAACCACAAGGC

Product: malonyl-CoA decarboxylase

Products: NA

Alternate protein names: Malonyl-CoA Decarboxylase Superfamily; Malonyl-CoA Decarboxylase Superfamily Protein; Malonyl-CoA Decarboxylase Protein; MCD Malonyl-CoA Decarboxylase MCD; Malonyl-CoA Decarboxylase Family Protein; Decarboxylase

Number of amino acids: Translated: 414; Mature: 413

Protein sequence:

>414_residues
MSYFGGLISTLFERRYQQALSDEVDSRTTCELCEALLSSHGEVSGVTLARNLLDRYAAMTEAEKTALFGFMAHDLEIDPD
AVTHTLEAYKNNPGKDTYRAFAAACEPRRQELARRLNQVPGATGQLVQMRKDLLRMMKDHPDLEPVDVDFKHLFSSWFNR
GFLVLRPIDWSSPANILEQIIAYEAVHEIDSWDELRRRLQPSDRRCFGFFHPSMADEPLIFVEVALTEGVPSSVQDLLAD
ERDVITAQDADTAVFYSISNCQSGLAGISFGNSLIKQVVADLAKDLPGLTTFVTLSPIPGLNRWLQDADIDALKDADTQA
LAAHYLLEAKRSDGMPFDPVARFHLGNGALVHAVHAEADVSPNGRKQSNGAMVNYLYDLSQISQNHEKFVGDKIVVASTT
VKALSGSVTTSLGT

Sequences:

>Translated_414_residues
MSYFGGLISTLFERRYQQALSDEVDSRTTCELCEALLSSHGEVSGVTLARNLLDRYAAMTEAEKTALFGFMAHDLEIDPD
AVTHTLEAYKNNPGKDTYRAFAAACEPRRQELARRLNQVPGATGQLVQMRKDLLRMMKDHPDLEPVDVDFKHLFSSWFNR
GFLVLRPIDWSSPANILEQIIAYEAVHEIDSWDELRRRLQPSDRRCFGFFHPSMADEPLIFVEVALTEGVPSSVQDLLAD
ERDVITAQDADTAVFYSISNCQSGLAGISFGNSLIKQVVADLAKDLPGLTTFVTLSPIPGLNRWLQDADIDALKDADTQA
LAAHYLLEAKRSDGMPFDPVARFHLGNGALVHAVHAEADVSPNGRKQSNGAMVNYLYDLSQISQNHEKFVGDKIVVASTT
VKALSGSVTTSLGT
>Mature_413_residues
SYFGGLISTLFERRYQQALSDEVDSRTTCELCEALLSSHGEVSGVTLARNLLDRYAAMTEAEKTALFGFMAHDLEIDPDA
VTHTLEAYKNNPGKDTYRAFAAACEPRRQELARRLNQVPGATGQLVQMRKDLLRMMKDHPDLEPVDVDFKHLFSSWFNRG
FLVLRPIDWSSPANILEQIIAYEAVHEIDSWDELRRRLQPSDRRCFGFFHPSMADEPLIFVEVALTEGVPSSVQDLLADE
RDVITAQDADTAVFYSISNCQSGLAGISFGNSLIKQVVADLAKDLPGLTTFVTLSPIPGLNRWLQDADIDALKDADTQAL
AAHYLLEAKRSDGMPFDPVARFHLGNGALVHAVHAEADVSPNGRKQSNGAMVNYLYDLSQISQNHEKFVGDKIVVASTTV
KALSGSVTTSLGT

Specific function: Unknown

COG id: COG1593

COG function: function code G; TRAP-type C4-dicarboxylate transport system, large permease component

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI110349750, Length=358, Percent_Identity=31.8435754189944, Blast_Score=184, Evalue=1e-46,
Organism=Caenorhabditis elegans, GI71985309, Length=438, Percent_Identity=28.9954337899543, Blast_Score=201, Evalue=6e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 45723; Mature: 45592

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYFGGLISTLFERRYQQALSDEVDSRTTCELCEALLSSHGEVSGVTLARNLLDRYAAMT
CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
EAEKTALFGFMAHDLEIDPDAVTHTLEAYKNNPGKDTYRAFAAACEPRRQELARRLNQVP
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHCC
GATGQLVQMRKDLLRMMKDHPDLEPVDVDFKHLFSSWFNRGFLVLRPIDWSSPANILEQI
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHH
IAYEAVHEIDSWDELRRRLQPSDRRCFGFFHPSMADEPLIFVEVALTEGVPSSVQDLLAD
HHHHHHHHCCCHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCHHHHHHHCC
ERDVITAQDADTAVFYSISNCQSGLAGISFGNSLIKQVVADLAKDLPGLTTFVTLSPIPG
CCCEEEECCCCCEEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
LNRWLQDADIDALKDADTQALAAHYLLEAKRSDGMPFDPVARFHLGNGALVHAVHAEADV
HHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCEEEEEECCCCC
SPNGRKQSNGAMVNYLYDLSQISQNHEKFVGDKIVVASTTVKALSGSVTTSLGT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCCHHCCCC
>Mature Secondary Structure 
SYFGGLISTLFERRYQQALSDEVDSRTTCELCEALLSSHGEVSGVTLARNLLDRYAAMT
CHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
EAEKTALFGFMAHDLEIDPDAVTHTLEAYKNNPGKDTYRAFAAACEPRRQELARRLNQVP
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHCC
GATGQLVQMRKDLLRMMKDHPDLEPVDVDFKHLFSSWFNRGFLVLRPIDWSSPANILEQI
CCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHHHHHH
IAYEAVHEIDSWDELRRRLQPSDRRCFGFFHPSMADEPLIFVEVALTEGVPSSVQDLLAD
HHHHHHHHCCCHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEEEECCCCCHHHHHHHCC
ERDVITAQDADTAVFYSISNCQSGLAGISFGNSLIKQVVADLAKDLPGLTTFVTLSPIPG
CCCEEEECCCCCEEEEEHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
LNRWLQDADIDALKDADTQALAAHYLLEAKRSDGMPFDPVARFHLGNGALVHAVHAEADV
HHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHCCCCCCCCHHHEECCCCCEEEEEECCCCC
SPNGRKQSNGAMVNYLYDLSQISQNHEKFVGDKIVVASTTVKALSGSVTTSLGT
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHCCCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA