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The map label for this gene is oxaA

Identifier: 110678771

GI number: 110678771

Start: 1381435

End: 1383255

Strand: Reverse

Name: oxaA

Synonym: RD1_1455

Alternate gene names: 110678771

Gene position: 1383255-1381435 (Counterclockwise)

Preceding gene: 110678772

Following gene: 110678770

Centisome position: 33.47

GC content: 57.44

Gene sequence:

>1821_bases
ATGGACGACCAAAACAAGAACCTTATTCTTGCAACAGCACTCAGCTTCATCGTGATCCTGGTGTGGTTTGTTCTATTCCC
CCCACCCGAACCCGAGATGCCGCTCACCGGGGAGACGTCGACCGAACTGACACCGGACGCGGCCACGGGCAGCCTGCCAT
CCGTGACCTCGGACACCGCGCCATCCGTGGTGATCGAGGGCGAAACCCGCTCCGCCGCACTTGAACAGGCGCCCCGGGTT
GAAATCGCCACGGACCGCGTGAAGGGGTCGATTTCACTGCTGGGCGGACGGATCGATGACCTGTCCCTGAAAGACTACCG
CGAAACCCAGGAGGAAGACGCAGACATCGTTACGATGCTCTCCCCCGTGGGCAGCCCCGGGGCGTATTACGCGCTCTACG
GCTGGGCGGCCGGCGCGGGCGTAGACCCATCCCAAGTGCCCGGCCCGGATACCGAATGGCAAGTCATCGACGGCGATATT
CTGTCGGTGGATGCCCCTGTCACATTGCAGTGGGACAATGGCGCGGGGCTGTCGTTTACCCGCATCATTGAAATTGACGA
CAACTACATGTTCCAGATCACGCAATCGGTGGCCAACACGTCCGACGCCCCTGTGACCGTCGCGCCTTACGGAATTCTCG
CCCGCCATGGCGAGCCGGACGATCTAAAGAACTTCTTCATCCTGCATGAAGGCGTGGTCGCAATGGCAGACGGCGAGTTG
ACGGAAACCAATTGGGACGACATCCCGGAATTCCCTGTGGATCAACGGGAAGGCGTGCCCGCCGAGCGGATCGAAAACGT
GCTGAACGGCTGGATCGGCTTCACCGATCACTTCTGGATGTCGGTTCTGATTCCCGACCCCAGCGCCTCGGCAAGACTGA
CGACCAAATACCGTCCTCGTGCCGACATCTATCAGGCGGAAACCGTTTTGCCCGCGCAGACGGTCGCACCGGGCACATCC
GTAAGCGCCACGACCCAGCTCTTTGCAGGCGCAAAGGAATGGGAAACGATCCGCAACTATCAGACCGATGGCGTTGACCG
TTTCATCGACAGCATCGACTGGGGCTGGTTCTTCTTCCTGACCAAACCGATCTTCTTTTTGCTGCATTACCTCAATGCGT
TCATCGGCAACATGGGCTGGGCGATTATCGGCCTGACCCTGATCATCAAGGCAATCCTACTGCCGCTGGCCTATAAATCC
TATGTCTCCATGGCGAAGATGAAAGAGCTTCAGCCGCAAATGGAAAAGCTGAAGGAAGAGGCTGGCGACGACCGTCAGAA
AATGCAGCAGGGCATGATGGAACTCTACAAGAAGGAAAAGGTGAACCCGGCGGCGGGCTGCCTGCCCATCCTGCTCCAGA
TCCCGATCTTCTTTTCGCTTTACAAGGTGATTTTCGTCACGATCGAACTGCGCCACGCGCCTTTCTTCGGGCCGTTTCAG
GACCTCAGCGCGCCGGACCCCACTTCGATCATGAACCTCTACGGGCTCTTGCCGTTCGACGGGCCAGAGCCGGGGTCGAT
CATGGCACTCATCTTTATCGGTATCCTTCCGCTGTTGCTGGGTATTTCCATGTGGCTGCAACAGAAACTCAACCCCGCGC
CCACTGACCCGACGCAACAGATGATCTTTGCATGGATGCCTTGGGTGTTCATGTTCATGCTCGGTGGCTTTGCAAGTGGT
CTGGTGGTCTACTGGATCGCGAACAACACGATCACCTTCGTGCAACAATACATGATCATGCGCAGTCAGGGATATAAACC
GGATGTCTTTGGCAACATAAAAGGCGGGTTTCAGAAGAAAACAAAACCCGACTCGAAATGA

Upstream 100 bases:

>100_bases
ATCGGTAGCAGATCATGGGGAAAACCCCGAATCTGCTTGACCTTTGTGCCGACACTCTGTTGAACCACGCTGATACTCAA
CAGAGCAGGTGGCTGCCCCG

Downstream 100 bases:

>100_bases
CCACCATCACGACGTTGCTGCGCCATCCGCTCAAAAGCCATGGGCGGGAGGCGTTGCAGCACACAACCCTCACAGCAGGG
CAGCCGATGCCGTTCGACCG

Product: putative inner membrane protein translocase component YidC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 606; Mature: 606

Protein sequence:

>606_residues
MDDQNKNLILATALSFIVILVWFVLFPPPEPEMPLTGETSTELTPDAATGSLPSVTSDTAPSVVIEGETRSAALEQAPRV
EIATDRVKGSISLLGGRIDDLSLKDYRETQEEDADIVTMLSPVGSPGAYYALYGWAAGAGVDPSQVPGPDTEWQVIDGDI
LSVDAPVTLQWDNGAGLSFTRIIEIDDNYMFQITQSVANTSDAPVTVAPYGILARHGEPDDLKNFFILHEGVVAMADGEL
TETNWDDIPEFPVDQREGVPAERIENVLNGWIGFTDHFWMSVLIPDPSASARLTTKYRPRADIYQAETVLPAQTVAPGTS
VSATTQLFAGAKEWETIRNYQTDGVDRFIDSIDWGWFFFLTKPIFFLLHYLNAFIGNMGWAIIGLTLIIKAILLPLAYKS
YVSMAKMKELQPQMEKLKEEAGDDRQKMQQGMMELYKKEKVNPAAGCLPILLQIPIFFSLYKVIFVTIELRHAPFFGPFQ
DLSAPDPTSIMNLYGLLPFDGPEPGSIMALIFIGILPLLLGISMWLQQKLNPAPTDPTQQMIFAWMPWVFMFMLGGFASG
LVVYWIANNTITFVQQYMIMRSQGYKPDVFGNIKGGFQKKTKPDSK

Sequences:

>Translated_606_residues
MDDQNKNLILATALSFIVILVWFVLFPPPEPEMPLTGETSTELTPDAATGSLPSVTSDTAPSVVIEGETRSAALEQAPRV
EIATDRVKGSISLLGGRIDDLSLKDYRETQEEDADIVTMLSPVGSPGAYYALYGWAAGAGVDPSQVPGPDTEWQVIDGDI
LSVDAPVTLQWDNGAGLSFTRIIEIDDNYMFQITQSVANTSDAPVTVAPYGILARHGEPDDLKNFFILHEGVVAMADGEL
TETNWDDIPEFPVDQREGVPAERIENVLNGWIGFTDHFWMSVLIPDPSASARLTTKYRPRADIYQAETVLPAQTVAPGTS
VSATTQLFAGAKEWETIRNYQTDGVDRFIDSIDWGWFFFLTKPIFFLLHYLNAFIGNMGWAIIGLTLIIKAILLPLAYKS
YVSMAKMKELQPQMEKLKEEAGDDRQKMQQGMMELYKKEKVNPAAGCLPILLQIPIFFSLYKVIFVTIELRHAPFFGPFQ
DLSAPDPTSIMNLYGLLPFDGPEPGSIMALIFIGILPLLLGISMWLQQKLNPAPTDPTQQMIFAWMPWVFMFMLGGFASG
LVVYWIANNTITFVQQYMIMRSQGYKPDVFGNIKGGFQKKTKPDSK
>Mature_606_residues
MDDQNKNLILATALSFIVILVWFVLFPPPEPEMPLTGETSTELTPDAATGSLPSVTSDTAPSVVIEGETRSAALEQAPRV
EIATDRVKGSISLLGGRIDDLSLKDYRETQEEDADIVTMLSPVGSPGAYYALYGWAAGAGVDPSQVPGPDTEWQVIDGDI
LSVDAPVTLQWDNGAGLSFTRIIEIDDNYMFQITQSVANTSDAPVTVAPYGILARHGEPDDLKNFFILHEGVVAMADGEL
TETNWDDIPEFPVDQREGVPAERIENVLNGWIGFTDHFWMSVLIPDPSASARLTTKYRPRADIYQAETVLPAQTVAPGTS
VSATTQLFAGAKEWETIRNYQTDGVDRFIDSIDWGWFFFLTKPIFFLLHYLNAFIGNMGWAIIGLTLIIKAILLPLAYKS
YVSMAKMKELQPQMEKLKEEAGDDRQKMQQGMMELYKKEKVNPAAGCLPILLQIPIFFSLYKVIFVTIELRHAPFFGPFQ
DLSAPDPTSIMNLYGLLPFDGPEPGSIMALIFIGILPLLLGISMWLQQKLNPAPTDPTQQMIFAWMPWVFMFMLGGFASG
LVVYWIANNTITFVQQYMIMRSQGYKPDVFGNIKGGFQKKTKPDSK

Specific function: Required for the insertion of integral membrane proteins into the membrane. Probably plays an essential role in the integration of proteins of the respiratory chain complexes. Involved in integration of membrane proteins that insert dependently and indepe

COG id: COG0706

COG function: function code U; Preprotein translocase subunit YidC

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OXA1/oxaA family. Type 1 subfamily

Homologues:

Organism=Escherichia coli, GI1790140, Length=523, Percent_Identity=28.6806883365201, Blast_Score=211, Evalue=9e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): OXAA_ROSDO (Q16AA1)

Other databases:

- EMBL:   CP000362
- RefSeq:   YP_681778.1
- STRING:   Q16AA1
- GeneID:   4197268
- GenomeReviews:   CP000362_GR
- KEGG:   rde:RD1_1455
- NMPDR:   fig|375451.6.peg.1364
- eggNOG:   COG0706
- HOGENOM:   HBG507812
- OMA:   FVTIEMR
- PhylomeDB:   Q16AA1
- ProtClustDB:   PRK01318
- BioCyc:   RDEN375451:RD1_1455-MONOMER
- HAMAP:   MF_01810
- InterPro:   IPR019998
- InterPro:   IPR001708
- PANTHER:   PTHR12428
- PRINTS:   PR00701
- PRINTS:   PR01900
- TIGRFAMs:   TIGR03593
- TIGRFAMs:   TIGR03592

Pfam domain/function: PF02096 60KD_IMP

EC number: NA

Molecular weight: Translated: 67217; Mature: 67217

Theoretical pI: Translated: 4.27; Mature: 4.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1d7320dc)-; HASH(0x1446c4c0)-; HASH(0x14b1353c)-; HASH(0x1440fa9c)-; HASH(0x1d72df80)-; HASH(0x14d6fdfc)-;

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDQNKNLILATALSFIVILVWFVLFPPPEPEMPLTGETSTELTPDAATGSLPSVTSDTA
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PSVVIEGETRSAALEQAPRVEIATDRVKGSISLLGGRIDDLSLKDYRETQEEDADIVTML
CEEEEECCCHHHHHHHCCCCEEEHHHHCCCHHEECCCCCCCCCHHHHHHHHCCCCEEEEC
SPVGSPGAYYALYGWAAGAGVDPSQVPGPDTEWQVIDGDILSVDAPVTLQWDNGAGLSFT
CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCEEEECCCEEEEECCCCCCEEE
RIIEIDDNYMFQITQSVANTSDAPVTVAPYGILARHGEPDDLKNFFILHEGVVAMADGEL
EEEEECCCEEEEEHHHHCCCCCCCEEEECCHHHCCCCCCHHHHHEEEEECCEEEEECCCC
TETNWDDIPEFPVDQREGVPAERIENVLNGWIGFTDHFWMSVLIPDPSASARLTTKYRPR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEECCCCC
ADIYQAETVLPAQTVAPGTSVSATTQLFAGAKEWETIRNYQTDGVDRFIDSIDWGWFFFL
CCHHHHHHCCCHHHCCCCCCCHHHHHHHHCHHHHHHHHCCCCCCHHHHHHHCCCHHHHHH
TKPIFFLLHYLNAFIGNMGWAIIGLTLIIKAILLPLAYKSYVSMAKMKELQPQMEKLKEE
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGDDRQKMQQGMMELYKKEKVNPAAGCLPILLQIPIFFSLYKVIFVTIELRHAPFFGPFQ
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHH
DLSAPDPTSIMNLYGLLPFDGPEPGSIMALIFIGILPLLLGISMWLQQKLNPAPTDPTQQ
HCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
MIFAWMPWVFMFMLGGFASGLVVYWIANNTITFVQQYMIMRSQGYKPDVFGNIKGGFQKK
HHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
TKPDSK
CCCCCH
>Mature Secondary Structure
MDDQNKNLILATALSFIVILVWFVLFPPPEPEMPLTGETSTELTPDAATGSLPSVTSDTA
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
PSVVIEGETRSAALEQAPRVEIATDRVKGSISLLGGRIDDLSLKDYRETQEEDADIVTML
CEEEEECCCHHHHHHHCCCCEEEHHHHCCCHHEECCCCCCCCCHHHHHHHHCCCCEEEEC
SPVGSPGAYYALYGWAAGAGVDPSQVPGPDTEWQVIDGDILSVDAPVTLQWDNGAGLSFT
CCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCEEEECCCEEEEECCCCCCEEE
RIIEIDDNYMFQITQSVANTSDAPVTVAPYGILARHGEPDDLKNFFILHEGVVAMADGEL
EEEEECCCEEEEEHHHHCCCCCCCEEEECCHHHCCCCCCHHHHHEEEEECCEEEEECCCC
TETNWDDIPEFPVDQREGVPAERIENVLNGWIGFTDHFWMSVLIPDPSASARLTTKYRPR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEECCCCC
ADIYQAETVLPAQTVAPGTSVSATTQLFAGAKEWETIRNYQTDGVDRFIDSIDWGWFFFL
CCHHHHHHCCCHHHCCCCCCCHHHHHHHHCHHHHHHHHCCCCCCHHHHHHHCCCHHHHHH
TKPIFFLLHYLNAFIGNMGWAIIGLTLIIKAILLPLAYKSYVSMAKMKELQPQMEKLKEE
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AGDDRQKMQQGMMELYKKEKVNPAAGCLPILLQIPIFFSLYKVIFVTIELRHAPFFGPFQ
CCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCCHH
DLSAPDPTSIMNLYGLLPFDGPEPGSIMALIFIGILPLLLGISMWLQQKLNPAPTDPTQQ
HCCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHH
MIFAWMPWVFMFMLGGFASGLVVYWIANNTITFVQQYMIMRSQGYKPDVFGNIKGGFQKK
HHHHHHHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
TKPDSK
CCCCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA