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The map label for this gene is yddU [C]

Identifier: 110678772

GI number: 110678772

Start: 1383427

End: 1384974

Strand: Reverse

Name: yddU [C]

Synonym: RD1_1456

Alternate gene names: 110678772

Gene position: 1384974-1383427 (Counterclockwise)

Preceding gene: 110678773

Following gene: 110678771

Centisome position: 33.51

GC content: 56.59

Gene sequence:

>1548_bases
ATGTTCAAAGTGCTGGCAGAGGCGTTCGCCTCAGCACGACTCCGACTTGGCGCAATTCTTTTCAGCCCGCAAAGCCTCGC
TTTCTTGCCCGCATTTTGCCTTGGGCTCTATTGGTATGGCGGTGAAACGGCTTTGATGATCACTGCCTTGGTTTTTCCCG
TATTCTTCCTCGTGGCACGTGCAAAACTAGCTGAAACAGTGACCACGTCCAGGCAGGATAGCGTGCTGGGCGTGATGCAG
CCCGATGGCTTTCAGGATATCGTTGCGGCAAGGTTCAGGGAGGCGCGCGCAGGCGGATTGATCTCCACCGTGTTTCAGAT
TGAAATTGATGATCACACTTCGCTGGTCGAAAGACATGGGCAGCGCGCGGCCGAAGTTATTTCCACAACATCCGCTGACC
GGATTGCCGCAGTGCTACGAGACCGGGACGCTGTAACGCATCTGGATACCTTTAAATACGCAGTCTGCCTTGAACCGGTG
CGCCAGATGGATCTTGAACTGTGTATCCAGCTCGCCGGCAGGATACAGGCCGCTTTGGAGGAGCCGATCGCACTGGATGC
CACCGCAGTGTGTATCACCAGTTCGGTCGGCTTTTGTCAGCAGACCAAAGTGCTTTCGCGCTCGGGCGAAGCATGGCTGG
CAGCGGCGGGCCATGCCCTGCGGGAAGCCCATCTGAATGGCCCCGGGGCGATCCGCGCCTATTCAGAGAAAATGCAACAA
AAATCGGAAATCCGCGCGGAACTGCGCGAAGAGGTCGCGCAAGCCCTCGAAAAAGGGCAGATAAAGCCCTGGTTTCAACC
CCAGATATCCACCGATACAGGGCTGGTTACCGGTTTTGAAGCTCTCGCAAGGTGGAACCACCCCAAGCGGGGCATGGTGC
CACCGGGGGCTTTTCTGACCGCCATTGAACAGGCGGGTATGTTGGAAAAACTTGCTGAAGTCATGATATTCCACGCGTTT
ACCGCCCTCAAGGCATGGGACAGCGCAGGGGTGTGCGTCCCACAGGTGGGTGTGAATTTTGCCGGTCCGGAATTGAGCAA
TCCCAAACTGGTCGACAAGATAATCTGGGAGTTGGACAGGTTCGATCTCGCCCCAGAGCGCCTCGCCGTCGAGGTGCTGG
AAACTGTCGTCGCGAATTCACCGGACGATACGATCACGCGCAACATCAACGGGCTCAGCAAACTGGGCTGCCGGATTGAC
CTTGATGATTTTGGGACAGGGCATGCATCCATCTCATCCATACGCCGGTTTTCCGTCAGCCGGATCAAGATAGACCGCTC
TTTCGTCATAAAAGCAGATCGCGACCCCGAACAGCAGCGCATGATCAGCGCCATTCTGACCATGGCGGAACGGCTGGAGG
TTGAAACATTGGCCGAAGGAGTCGAATCCGTTGGCGAACATGCGCTGCTGGCCCAACTGGGTTGCGATCATGTGCAAGGC
TTCGGCATCGGAAAACCCATGCCTTTCGACCAGACACTGGACTGGATTGCCAGCCACAACGCCAAGCTGCAGGCCACGCC
ACAGATATTGCCCAATAAACTCCGCTAG

Upstream 100 bases:

>100_bases
CATCGTAAAAACCATCCGCCTGTTAACCGAGACGTCATTCTGACTCGTCTAGTCTCTACGCGTTTACCGCTATGCAAAGC
GCCGTTGAGAGAGGAATGAC

Downstream 100 bases:

>100_bases
AAGCGGCCCATGTCGGCAAGGTTGAAGCGATCGCCCCCACACACGCCGAGCGACCGCTTGCACAAGCGACGATCGGTAGC
AGATCATGGGGAAAACCCCG

Product: EAL domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 515; Mature: 515

Protein sequence:

>515_residues
MFKVLAEAFASARLRLGAILFSPQSLAFLPAFCLGLYWYGGETALMITALVFPVFFLVARAKLAETVTTSRQDSVLGVMQ
PDGFQDIVAARFREARAGGLISTVFQIEIDDHTSLVERHGQRAAEVISTTSADRIAAVLRDRDAVTHLDTFKYAVCLEPV
RQMDLELCIQLAGRIQAALEEPIALDATAVCITSSVGFCQQTKVLSRSGEAWLAAAGHALREAHLNGPGAIRAYSEKMQQ
KSEIRAELREEVAQALEKGQIKPWFQPQISTDTGLVTGFEALARWNHPKRGMVPPGAFLTAIEQAGMLEKLAEVMIFHAF
TALKAWDSAGVCVPQVGVNFAGPELSNPKLVDKIIWELDRFDLAPERLAVEVLETVVANSPDDTITRNINGLSKLGCRID
LDDFGTGHASISSIRRFSVSRIKIDRSFVIKADRDPEQQRMISAILTMAERLEVETLAEGVESVGEHALLAQLGCDHVQG
FGIGKPMPFDQTLDWIASHNAKLQATPQILPNKLR

Sequences:

>Translated_515_residues
MFKVLAEAFASARLRLGAILFSPQSLAFLPAFCLGLYWYGGETALMITALVFPVFFLVARAKLAETVTTSRQDSVLGVMQ
PDGFQDIVAARFREARAGGLISTVFQIEIDDHTSLVERHGQRAAEVISTTSADRIAAVLRDRDAVTHLDTFKYAVCLEPV
RQMDLELCIQLAGRIQAALEEPIALDATAVCITSSVGFCQQTKVLSRSGEAWLAAAGHALREAHLNGPGAIRAYSEKMQQ
KSEIRAELREEVAQALEKGQIKPWFQPQISTDTGLVTGFEALARWNHPKRGMVPPGAFLTAIEQAGMLEKLAEVMIFHAF
TALKAWDSAGVCVPQVGVNFAGPELSNPKLVDKIIWELDRFDLAPERLAVEVLETVVANSPDDTITRNINGLSKLGCRID
LDDFGTGHASISSIRRFSVSRIKIDRSFVIKADRDPEQQRMISAILTMAERLEVETLAEGVESVGEHALLAQLGCDHVQG
FGIGKPMPFDQTLDWIASHNAKLQATPQILPNKLR
>Mature_515_residues
MFKVLAEAFASARLRLGAILFSPQSLAFLPAFCLGLYWYGGETALMITALVFPVFFLVARAKLAETVTTSRQDSVLGVMQ
PDGFQDIVAARFREARAGGLISTVFQIEIDDHTSLVERHGQRAAEVISTTSADRIAAVLRDRDAVTHLDTFKYAVCLEPV
RQMDLELCIQLAGRIQAALEEPIALDATAVCITSSVGFCQQTKVLSRSGEAWLAAAGHALREAHLNGPGAIRAYSEKMQQ
KSEIRAELREEVAQALEKGQIKPWFQPQISTDTGLVTGFEALARWNHPKRGMVPPGAFLTAIEQAGMLEKLAEVMIFHAF
TALKAWDSAGVCVPQVGVNFAGPELSNPKLVDKIIWELDRFDLAPERLAVEVLETVVANSPDDTITRNINGLSKLGCRID
LDDFGTGHASISSIRRFSVSRIKIDRSFVIKADRDPEQQRMISAILTMAERLEVETLAEGVESVGEHALLAQLGCDHVQG
FGIGKPMPFDQTLDWIASHNAKLQATPQILPNKLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=335, Percent_Identity=27.7611940298507, Blast_Score=160, Evalue=2e-40,
Organism=Escherichia coli, GI1787541, Length=419, Percent_Identity=27.9236276849642, Blast_Score=155, Evalue=9e-39,
Organism=Escherichia coli, GI87081845, Length=249, Percent_Identity=30.9236947791165, Blast_Score=135, Evalue=5e-33,
Organism=Escherichia coli, GI226510982, Length=381, Percent_Identity=24.9343832020997, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1788502, Length=270, Percent_Identity=30.3703703703704, Blast_Score=120, Evalue=2e-28,
Organism=Escherichia coli, GI1790496, Length=248, Percent_Identity=26.6129032258064, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI87081743, Length=247, Percent_Identity=29.5546558704453, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1787055, Length=240, Percent_Identity=28.75, Blast_Score=105, Evalue=9e-24,
Organism=Escherichia coli, GI1786507, Length=257, Percent_Identity=29.5719844357977, Blast_Score=104, Evalue=1e-23,
Organism=Escherichia coli, GI87082096, Length=263, Percent_Identity=27.3764258555133, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI87081980, Length=253, Percent_Identity=23.7154150197628, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1788849, Length=268, Percent_Identity=26.865671641791, Blast_Score=85, Evalue=1e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 56399; Mature: 56399

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS50883 EAL ; PS50887 GGDEF ; PS00284 SERPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFKVLAEAFASARLRLGAILFSPQSLAFLPAFCLGLYWYGGETALMITALVFPVFFLVAR
CHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
AKLAETVTTSRQDSVLGVMQPDGFQDIVAARFREARAGGLISTVFQIEIDDHTSLVERHG
HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHH
QRAAEVISTTSADRIAAVLRDRDAVTHLDTFKYAVCLEPVRQMDLELCIQLAGRIQAALE
HHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EPIALDATAVCITSSVGFCQQTKVLSRSGEAWLAAAGHALREAHLNGPGAIRAYSEKMQQ
CCCCCCHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
KSEIRAELREEVAQALEKGQIKPWFQPQISTDTGLVTGFEALARWNHPKRGMVPPGAFLT
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHH
AIEQAGMLEKLAEVMIFHAFTALKAWDSAGVCVPQVGVNFAGPELSNPKLVDKIIWELDR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHH
FDLAPERLAVEVLETVVANSPDDTITRNINGLSKLGCRIDLDDFGTGHASISSIRRFSVS
CCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHCCCEEECCCCCCCHHHHHHHHHHHHH
RIKIDRSFVIKADRDPEQQRMISAILTMAERLEVETLAEGVESVGEHALLAQLGCDHVQG
HEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCC
FGIGKPMPFDQTLDWIASHNAKLQATPQILPNKLR
CCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCC
>Mature Secondary Structure
MFKVLAEAFASARLRLGAILFSPQSLAFLPAFCLGLYWYGGETALMITALVFPVFFLVAR
CHHHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
AKLAETVTTSRQDSVLGVMQPDGFQDIVAARFREARAGGLISTVFQIEIDDHTSLVERHG
HHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEEEEECCHHHHHHHHH
QRAAEVISTTSADRIAAVLRDRDAVTHLDTFKYAVCLEPVRQMDLELCIQLAGRIQAALE
HHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EPIALDATAVCITSSVGFCQQTKVLSRSGEAWLAAAGHALREAHLNGPGAIRAYSEKMQQ
CCCCCCHHHHHHHCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
KSEIRAELREEVAQALEKGQIKPWFQPQISTDTGLVTGFEALARWNHPKRGMVPPGAFLT
HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHH
AIEQAGMLEKLAEVMIFHAFTALKAWDSAGVCVPQVGVNFAGPELSNPKLVDKIIWELDR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCCCCCHHHHHHHHHHHH
FDLAPERLAVEVLETVVANSPDDTITRNINGLSKLGCRIDLDDFGTGHASISSIRRFSVS
CCCCHHHHHHHHHHHHHCCCCCCHHHHCCCCHHHCCCEEECCCCCCCHHHHHHHHHHHHH
RIKIDRSFVIKADRDPEQQRMISAILTMAERLEVETLAEGVESVGEHALLAQLGCDHVQG
HEEECCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCC
FGIGKPMPFDQTLDWIASHNAKLQATPQILPNKLR
CCCCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]