Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

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The map label for this gene is ycbX [C]

Identifier: 110678770

GI number: 110678770

Start: 1380698

End: 1381438

Strand: Reverse

Name: ycbX [C]

Synonym: RD1_1454

Alternate gene names: 110678770

Gene position: 1381438-1380698 (Counterclockwise)

Preceding gene: 110678771

Following gene: 110678769

Centisome position: 33.42

GC content: 61.81

Gene sequence:

>741_bases
ATGACCACCATCACGACGTTGCTGCGCCATCCGCTCAAAAGCCATGGGCGGGAGGCGTTGCAGCACACAACCCTCACAGC
AGGGCAGCCGATGCCGTTCGACCGGCTTTGGGCCGTGGCGCATGAGGCATCAAAGGCAGACGGCAGCACATGGGTGCCCT
GCGCGAACTTCAGCCGCGTGTCCAAAGCGCCAAACCTCATGGCGATCACCTGCCGGCTGAACGAAGCGACCGGCACGTTG
ACCCTGTCGCACCCCGACAGACCCGACCTGACGTTCAACCCGGACACCGACACGGATGCGTTTATTGCCTGGGTCAGCCC
GCTTGTTCCGCAGGACCGGGCCTTGCCTGAGCGCATCATCAAACTGGCGGGCCGCGGATTTACCGACAGCGATTTTCCAT
CTGTCACCCTGTGCAACCACGCGTCGCATCGGGCAGTTGAGGCCGAATTGAAACAGCCTTTGTCGATCCACCGCTGGCGG
GGCAACATCTGGTTTGAAACCGATACGCCATGGATTGAATTTGACTGGCTGGGCAAGGATGTCCGCATCGGCGACTGTAT
TCTCACCGTGCGCGAACGGACTGACCGTTGCCTTGCCACCACGGCCAATCCGGACACCGGCATGCGGGACGCGGATACGC
TGGCCGCGCTGGACACCTGGGGCCATCAGGATTTTTCTGTCCGCGCCGAGGTCAAACACGGTGGCACCATTCGCGTCGGC
GATCAGATTGAGGTGCTGTGA

Upstream 100 bases:

>100_bases
TCGTGCAACAATACATGATCATGCGCAGTCAGGGATATAAACCGGATGTCTTTGGCAACATAAAAGGCGGGTTTCAGAAG
AAAACAAAACCCGACTCGAA

Downstream 100 bases:

>100_bases
TGCAACTGCCCTTCCCGGTCGCGCAGGACCCTGATCAACACTCGCTCGAAAAGGGCCGCCTGCTCTTTGCGGGCGACACC
GAATTCGTCAAGGGCGTGGT

Product: MOSC domain-containing protein

Products: NA

Alternate protein names: MOSC Domain Containing Protein; Mosc Domain Protein; MOSC Domain Protein; Transcriptional Regulator; Mosc Domain; Xylene Monooxygenase Electron Transfer Component; Mosc Domain Containing Protein

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MTTITTLLRHPLKSHGREALQHTTLTAGQPMPFDRLWAVAHEASKADGSTWVPCANFSRVSKAPNLMAITCRLNEATGTL
TLSHPDRPDLTFNPDTDTDAFIAWVSPLVPQDRALPERIIKLAGRGFTDSDFPSVTLCNHASHRAVEAELKQPLSIHRWR
GNIWFETDTPWIEFDWLGKDVRIGDCILTVRERTDRCLATTANPDTGMRDADTLAALDTWGHQDFSVRAEVKHGGTIRVG
DQIEVL

Sequences:

>Translated_246_residues
MTTITTLLRHPLKSHGREALQHTTLTAGQPMPFDRLWAVAHEASKADGSTWVPCANFSRVSKAPNLMAITCRLNEATGTL
TLSHPDRPDLTFNPDTDTDAFIAWVSPLVPQDRALPERIIKLAGRGFTDSDFPSVTLCNHASHRAVEAELKQPLSIHRWR
GNIWFETDTPWIEFDWLGKDVRIGDCILTVRERTDRCLATTANPDTGMRDADTLAALDTWGHQDFSVRAEVKHGGTIRVG
DQIEVL
>Mature_245_residues
TTITTLLRHPLKSHGREALQHTTLTAGQPMPFDRLWAVAHEASKADGSTWVPCANFSRVSKAPNLMAITCRLNEATGTLT
LSHPDRPDLTFNPDTDTDAFIAWVSPLVPQDRALPERIIKLAGRGFTDSDFPSVTLCNHASHRAVEAELKQPLSIHRWRG
NIWFETDTPWIEFDWLGKDVRIGDCILTVRERTDRCLATTANPDTGMRDADTLAALDTWGHQDFSVRAEVKHGGTIRVGD
QIEVL

Specific function: Unknown

COG id: COG3217

COG function: function code R; Uncharacterized Fe-S protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27428; Mature: 27297

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTITTLLRHPLKSHGREALQHTTLTAGQPMPFDRLWAVAHEASKADGSTWVPCANFSRV
CCHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHCCCCCCEECCCCCCHHH
SKAPNLMAITCRLNEATGTLTLSHPDRPDLTFNPDTDTDAFIAWVSPLVPQDRALPERII
HCCCCEEEEEEEEECCCCEEEECCCCCCCCEECCCCCCHHHHEECCCCCCCCCHHHHHHH
KLAGRGFTDSDFPSVTLCNHASHRAVEAELKQPLSIHRWRGNIWFETDTPWIEFDWLGKD
HHHCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCEEEEECCEEEEECCCCEEEEEECCCC
VRIGDCILTVRERTDRCLATTANPDTGMRDADTLAALDTWGHQDFSVRAEVKHGGTIRVG
EEECCEEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCEEEEC
DQIEVL
CEEEEC
>Mature Secondary Structure 
TTITTLLRHPLKSHGREALQHTTLTAGQPMPFDRLWAVAHEASKADGSTWVPCANFSRV
CHHHHHHHHHHHHHHHHHHHHHEECCCCCCCHHHHHHHHHHHCCCCCCEECCCCCCHHH
SKAPNLMAITCRLNEATGTLTLSHPDRPDLTFNPDTDTDAFIAWVSPLVPQDRALPERII
HCCCCEEEEEEEEECCCCEEEECCCCCCCCEECCCCCCHHHHEECCCCCCCCCHHHHHHH
KLAGRGFTDSDFPSVTLCNHASHRAVEAELKQPLSIHRWRGNIWFETDTPWIEFDWLGKD
HHHCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCEEEEECCEEEEECCCCEEEEEECCCC
VRIGDCILTVRERTDRCLATTANPDTGMRDADTLAALDTWGHQDFSVRAEVKHGGTIRVG
EEECCEEEEEECCCCCEEEECCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCEEEEC
DQIEVL
CEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA