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The map label for this gene is 110678767

Identifier: 110678767

GI number: 110678767

Start: 1378270

End: 1379064

Strand: Reverse

Name: 110678767

Synonym: RD1_1450

Alternate gene names: NA

Gene position: 1379064-1378270 (Counterclockwise)

Preceding gene: 110678768

Following gene: 110678766

Centisome position: 33.37

GC content: 60.63

Gene sequence:

>795_bases
ATGGAAAACGAAGCACTTATCCGGCTCGCGATTTTCGTCGCTCTCTTTGCGCTCCTGGCGACACTTGAGACGCTCGCACC
GCGTCGCCTGCGCAAGCACACGCGCCGCACGCGGTGGGTCACAAATTGGAGCGTGACCGTCCTGAACACGCTCACGCTGC
GCGCGCTCGCCTTTGCCTTGCCACTGCTCGCCGTGGGTGCTGCCATGGACGCTGAGGCGAACGGTTGGGGGCTTTTCAAC
CTGATTGCGCTGCCCTTCTGGATTGAGGTCATCTGCGTCGTGCTGATCCTTGATTTCGCGATCTGGCTGCAGCACCTCAT
CACCCACAAGGTGCCGCTCCTGTGGCGCCTGCACCGGGTCCACCATGCGGATGTGGATATGGATGTGACGACTGCGATCC
GCTTTCACCCGATCGAGATTGCATTGTCGATGCTGCTGAAAATCGGTCTGGTCTATCTCTTGGGGCCAGCGGCCATCGCC
GTGGTCCTTTTCGAGATCATCCTCAACGGGACCGCGATGTTCAATCACGCCAATCTTGCCCTGCCGAAAGCGCTGGATCG
TCTGGTGCGCAAGGTACTGGTGACGCCTGACATGCACCGGGTCCATCATTCGGTGCACCGCCATGAACATGACAGCAACT
ACGGCTTTGCCCTGTCGATCTGGGACCGCATGTTCGGGACTTACATCGCGCAACCTGCTGCCGGGCATGACGCCATGCAG
GTGGGCCTTGAATGGCAGGATGACCGCCCGAGCAAGCTCGGCTGGTCGCTCTCCCTGCCGTTCGTGCGCAAGTGA

Upstream 100 bases:

>100_bases
CGCGGACTAGCGTTCCGCCATGCGATGGCATAGGCGTTTTCTGACGCAGATGTGTCAGGGAACGGCTTGTTCTGACAGTA
CTGGCGACTAGGTTAGACAC

Downstream 100 bases:

>100_bases
CATATGACGCCCTTCAGGCTGCGGCTCTGACCCGGTCCCTGACCATCCTTGGCGGGTTCCATCCCGCAGCCGATGACGGG
GTTCCGCCGGGTTTTCAGAC

Product: sterol desaturase, putative

Products: NA

Alternate protein names: Sterol Desaturase; Sterol Desaturase-Related Protein; Sterol Desaturase-Like Protein; C-5 Sterol Desaturase; Transmembrane Protein; Sterol Desaturase -Like Protein; Sterol Desaturase Family Protein; Fatty Acid Hydroxylase Superfamily; Sterol Desaturase-Like; Sterol Desaturate; Fatty Acid Hydroxylase Superfamily Protein; Sterol Desaturase Transmembrane Protein

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MENEALIRLAIFVALFALLATLETLAPRRLRKHTRRTRWVTNWSVTVLNTLTLRALAFALPLLAVGAAMDAEANGWGLFN
LIALPFWIEVICVVLILDFAIWLQHLITHKVPLLWRLHRVHHADVDMDVTTAIRFHPIEIALSMLLKIGLVYLLGPAAIA
VVLFEIILNGTAMFNHANLALPKALDRLVRKVLVTPDMHRVHHSVHRHEHDSNYGFALSIWDRMFGTYIAQPAAGHDAMQ
VGLEWQDDRPSKLGWSLSLPFVRK

Sequences:

>Translated_264_residues
MENEALIRLAIFVALFALLATLETLAPRRLRKHTRRTRWVTNWSVTVLNTLTLRALAFALPLLAVGAAMDAEANGWGLFN
LIALPFWIEVICVVLILDFAIWLQHLITHKVPLLWRLHRVHHADVDMDVTTAIRFHPIEIALSMLLKIGLVYLLGPAAIA
VVLFEIILNGTAMFNHANLALPKALDRLVRKVLVTPDMHRVHHSVHRHEHDSNYGFALSIWDRMFGTYIAQPAAGHDAMQ
VGLEWQDDRPSKLGWSLSLPFVRK
>Mature_264_residues
MENEALIRLAIFVALFALLATLETLAPRRLRKHTRRTRWVTNWSVTVLNTLTLRALAFALPLLAVGAAMDAEANGWGLFN
LIALPFWIEVICVVLILDFAIWLQHLITHKVPLLWRLHRVHHADVDMDVTTAIRFHPIEIALSMLLKIGLVYLLGPAAIA
VVLFEIILNGTAMFNHANLALPKALDRLVRKVLVTPDMHRVHHSVHRHEHDSNYGFALSIWDRMFGTYIAQPAAGHDAMQ
VGLEWQDDRPSKLGWSLSLPFVRK

Specific function: Unknown

COG id: COG3000

COG function: function code I; Sterol desaturase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI51972212, Length=142, Percent_Identity=30.9859154929577, Blast_Score=74, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29933; Mature: 29933

Theoretical pI: Translated: 9.93; Mature: 9.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MENEALIRLAIFVALFALLATLETLAPRRLRKHTRRTRWVTNWSVTVLNTLTLRALAFAL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHH
PLLAVGAAMDAEANGWGLFNLIALPFWIEVICVVLILDFAIWLQHLITHKVPLLWRLHRV
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
HHADVDMDVTTAIRFHPIEIALSMLLKIGLVYLLGPAAIAVVLFEIILNGTAMFNHANLA
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCH
LPKALDRLVRKVLVTPDMHRVHHSVHRHEHDSNYGFALSIWDRMFGTYIAQPAAGHDAMQ
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCCCCHHHH
VGLEWQDDRPSKLGWSLSLPFVRK
CCCCCCCCCCCCCCCEECCCCCCC
>Mature Secondary Structure
MENEALIRLAIFVALFALLATLETLAPRRLRKHTRRTRWVTNWSVTVLNTLTLRALAFAL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCHHHHHHHHHHHHHHHHH
PLLAVGAAMDAEANGWGLFNLIALPFWIEVICVVLILDFAIWLQHLITHKVPLLWRLHRV
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
HHADVDMDVTTAIRFHPIEIALSMLLKIGLVYLLGPAAIAVVLFEIILNGTAMFNHANLA
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCH
LPKALDRLVRKVLVTPDMHRVHHSVHRHEHDSNYGFALSIWDRMFGTYIAQPAAGHDAMQ
HHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHCCCCCCCHHHH
VGLEWQDDRPSKLGWSLSLPFVRK
CCCCCCCCCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA