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The map label for this gene is arcB [H]

Identifier: 110678733

GI number: 110678733

Start: 1352425

End: 1353477

Strand: Reverse

Name: arcB [H]

Synonym: RD1_1415

Alternate gene names: 110678733

Gene position: 1353477-1352425 (Counterclockwise)

Preceding gene: 110678734

Following gene: 110678731

Centisome position: 32.75

GC content: 59.26

Gene sequence:

>1053_bases
ATGGCCAACCCCTCCCCTTCCAAGCTCGCCTTCGTGCCCTTCGTCAGCGTCGAAAACATGATGAAACTGGTCCACCACAT
CGGGATTGAAACGATGCTGAAAGGCCTTGCCGACTATATCGAAGATGATTTCCGCCGCTGGGACCTGTTTGACAAAACCC
CCCGCGTGGCCAGCCATTCAAAAGAGGGCGTGATCGAACTCATGCCCACATCGGACGGCGAGGTTTACGGATTCAAATAC
GTCAACGGCCATCCGAAAAACACACGGGAAGGGCTGCAAACCGTCACCGCCTTTGGCCTGCTGGCCACGGTCGATACAGG
ATACCCAGTGCTGTTTTCGGAAATGACCGTGCTGACGGCCCTGCGCACGGCAGCAACCTCTGCGATGGTGGCCAAACACC
TTGCGCCAAAGAACGCGCAGACCATGGCGATGATCGGCAATGGGGCGCAATCCGAATTTCAGGCCCTCGCGATGCGGGTG
ATCTGCGGCGTTGACACCCTGCGGATGTACGACGTTGACCGCGCCGCGACGGATAAGGCGATGCGCAACCTCGATGGCTT
CGGCTTCACGCTTGTGCCCTGTTCCACGCCAGAAGAGGCGATCGAGGGCGCGCAGATCATCACGACCTGCACGGCGGACA
AGCAATATGCGACGATCCTGACCGACAACATGGTTGGCGCAGGGGTACATATCAATGCGATTGGCGGGGACTGCCCGGGC
AAAACCGAATTGCACGCGGATATTCTGACGCGCTCGGATGTCTTTGTCGAATACCCCCCACAGACACGGGTAGAGGGCGA
GATCCAGCAGATGCCCGAAGACTTCCCCGTGACCGAAATGTGGCAGGTCATCAACGGCACCGCGACGGGTCGCACGAATG
AACGTCAGATCACGCTCTTTGACGGGGTCGGTTTCGCCATCGAAGACTTCTCCGCCCTGCGCTACGTGCGCGACCAACTG
GCGGAAACCGGGCTTTGTCAGGAACTCGACATGATCGCCGACCCTGATGATCCGCGCGATCTGTTCGGCATGGTGCTGCG
CGCCAAACCGTGA

Upstream 100 bases:

>100_bases
AACGCGGTCGCACTGCGTCGCTTATGGTCGAACTCACCGCGTCGCTTTTGGGACGCCGCGTATTTGACCGCCCAACCCGC
AGCTATTCCTGAGAGACATC

Downstream 100 bases:

>100_bases
TCCAGGCCCCTGACAATTGAGCCAGTCGCGCTTTTGGGGTCCGCGCGCCATTGGCTCCGCTCTGTCGAGGCGGGACCTCA
TCCTAAGCCAATCTGGATGA

Product: ornithine cyclodeaminase

Products: NA

Alternate protein names: OCD [H]

Number of amino acids: Translated: 350; Mature: 349

Protein sequence:

>350_residues
MANPSPSKLAFVPFVSVENMMKLVHHIGIETMLKGLADYIEDDFRRWDLFDKTPRVASHSKEGVIELMPTSDGEVYGFKY
VNGHPKNTREGLQTVTAFGLLATVDTGYPVLFSEMTVLTALRTAATSAMVAKHLAPKNAQTMAMIGNGAQSEFQALAMRV
ICGVDTLRMYDVDRAATDKAMRNLDGFGFTLVPCSTPEEAIEGAQIITTCTADKQYATILTDNMVGAGVHINAIGGDCPG
KTELHADILTRSDVFVEYPPQTRVEGEIQQMPEDFPVTEMWQVINGTATGRTNERQITLFDGVGFAIEDFSALRYVRDQL
AETGLCQELDMIADPDDPRDLFGMVLRAKP

Sequences:

>Translated_350_residues
MANPSPSKLAFVPFVSVENMMKLVHHIGIETMLKGLADYIEDDFRRWDLFDKTPRVASHSKEGVIELMPTSDGEVYGFKY
VNGHPKNTREGLQTVTAFGLLATVDTGYPVLFSEMTVLTALRTAATSAMVAKHLAPKNAQTMAMIGNGAQSEFQALAMRV
ICGVDTLRMYDVDRAATDKAMRNLDGFGFTLVPCSTPEEAIEGAQIITTCTADKQYATILTDNMVGAGVHINAIGGDCPG
KTELHADILTRSDVFVEYPPQTRVEGEIQQMPEDFPVTEMWQVINGTATGRTNERQITLFDGVGFAIEDFSALRYVRDQL
AETGLCQELDMIADPDDPRDLFGMVLRAKP
>Mature_349_residues
ANPSPSKLAFVPFVSVENMMKLVHHIGIETMLKGLADYIEDDFRRWDLFDKTPRVASHSKEGVIELMPTSDGEVYGFKYV
NGHPKNTREGLQTVTAFGLLATVDTGYPVLFSEMTVLTALRTAATSAMVAKHLAPKNAQTMAMIGNGAQSEFQALAMRVI
CGVDTLRMYDVDRAATDKAMRNLDGFGFTLVPCSTPEEAIEGAQIITTCTADKQYATILTDNMVGAGVHINAIGGDCPGK
TELHADILTRSDVFVEYPPQTRVEGEIQQMPEDFPVTEMWQVINGTATGRTNERQITLFDGVGFAIEDFSALRYVRDQLA
ETGLCQELDMIADPDDPRDLFGMVLRAKP

Specific function: Unknown

COG id: COG2423

COG function: function code E; Predicted ornithine cyclodeaminase, mu-crystallin homolog

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ornithine cyclodeaminase family [H]

Homologues:

Organism=Homo sapiens, GI4503065, Length=269, Percent_Identity=24.1635687732342, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI62241008, Length=269, Percent_Identity=24.1635687732342, Blast_Score=70, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003462 [H]

Pfam domain/function: PF02423 OCD_Mu_crystall [H]

EC number: =4.3.1.12 [H]

Molecular weight: Translated: 38414; Mature: 38283

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.6 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANPSPSKLAFVPFVSVENMMKLVHHIGIETMLKGLADYIEDDFRRWDLFDKTPRVASHS
CCCCCCCCEEEEEHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCC
KEGVIELMPTSDGEVYGFKYVNGHPKNTREGLQTVTAFGLLATVDTGYPVLFSEMTVLTA
CCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
LRTAATSAMVAKHLAPKNAQTMAMIGNGAQSEFQALAMRVICGVDTLRMYDVDRAATDKA
HHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHEEECCCHHHHHHH
MRNLDGFGFTLVPCSTPEEAIEGAQIITTCTADKQYATILTDNMVGAGVHINAIGGDCPG
HHCCCCCCEEEEECCCHHHHHCCCEEEEEECCCCCEEEEEECCCCCCCEEEEECCCCCCC
KTELHADILTRSDVFVEYPPQTRVEGEIQQMPEDFPVTEMWQVINGTATGRTNERQITLF
CCCHHHHHHCCCCEEEECCCCCCCCCHHHHCCCCCCHHHHHHHHCCCCCCCCCCCEEEEE
DGVGFAIEDFSALRYVRDQLAETGLCQELDMIADPDDPRDLFGMVLRAKP
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
ANPSPSKLAFVPFVSVENMMKLVHHIGIETMLKGLADYIEDDFRRWDLFDKTPRVASHS
CCCCCCCEEEEEHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCC
KEGVIELMPTSDGEVYGFKYVNGHPKNTREGLQTVTAFGLLATVDTGYPVLFSEMTVLTA
CCCEEEEEECCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
LRTAATSAMVAKHLAPKNAQTMAMIGNGAQSEFQALAMRVICGVDTLRMYDVDRAATDKA
HHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCHHEEECCCHHHHHHH
MRNLDGFGFTLVPCSTPEEAIEGAQIITTCTADKQYATILTDNMVGAGVHINAIGGDCPG
HHCCCCCCEEEEECCCHHHHHCCCEEEEEECCCCCEEEEEECCCCCCCEEEEECCCCCCC
KTELHADILTRSDVFVEYPPQTRVEGEIQQMPEDFPVTEMWQVINGTATGRTNERQITLF
CCCHHHHHHCCCCEEEECCCCCCCCCHHHHCCCCCCHHHHHHHHCCCCCCCCCCCEEEEE
DGVGFAIEDFSALRYVRDQLAETGLCQELDMIADPDDPRDLFGMVLRAKP
CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9375792 [H]