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The map label for this gene is ybhD [C]

Identifier: 110678694

GI number: 110678694

Start: 1319700

End: 1320623

Strand: Direct

Name: ybhD [C]

Synonym: RD1_1374

Alternate gene names: 110678694

Gene position: 1319700-1320623 (Clockwise)

Preceding gene: 110678689

Following gene: 110678695

Centisome position: 31.93

GC content: 54.22

Gene sequence:

>924_bases
ATGATTTATTTACCATCAGCCCTCATGAACCGTATTATGGACATAGATCAGAACGCCAGTCAGGTGAGAAAGCCGCCTGA
TAGCCATGCGCTTTTGCATGAGATGATCCGGTCATTTACGACACTTGCGCGGACGTTGAACCTTAGTCATGCGGTTAAGG
AACTGGGCAGCACCCGGCAGACACTTCGTCGTCACATCGCGCTTTTGGAAGAGTCCAAAGGCGTTGAATTGTTTACAGTA
AAAGACCGCCAGTATCATTTGACGGAGGCAGGTCGACGCGCTTTGCCTGAGGCGGAAGAGGTGCTGGCGCGGGGTGATGC
GTGGCTTTCCGGACAGTCCGATGTGATCAACGGTTTGCAGTATTTGCGACATGTCGAGCCTGATGGCTGGTGTCATTTCC
AGCAGCAAAAACCGATCAGTGAGGTGTTCACGTCCACCGGAACGATTCTCGAAGAGGTCATGTGTGCATGGGCGCAAGCG
CGGGGTGAGTTGGAGCATGAAGCGTTTCAGGCTGTGCGGCCCTATTGTACGGTTTCGCGGCGCCACGAAGGAAACTGGTT
GTTCACCGAAGTCGGGGACCAGAGTTCGTTTGTGACGTGGTTTGGCTGGAAAAGGGCGCGGTCCAGTATCGGCAGCGCCC
TGGGGCAAATGCCGGGCGGTGACGGTTTTGGCCGGCTGGTCAACTATGCCTATGAAGAAATCGAGGCGACTCGCTCTGTG
CGGCTCGACCACGTCTTCACCCTCATGCCGAAGGGCGATGAAGGTGTCATGATGCCTATCTGTTATGAGCGGATGCTGTT
GGGAGCGAGATATCCCGATGACAGTTTTGCCATGATAACAGTCGTTAGGCGAACCTATGATGTGCATATTAATGGAGTGA
CCCACGAAATGCTGCGTCAGATGCCGGAGGACATGGTGATGTAG

Upstream 100 bases:

>100_bases
CACTCATCGCGGGAATCACCGTTTGGATCAACTGAGTACCTTTTTCTTTTTTTTTGACAAAAGATTTACGGGTGCTGGGT
GAAAAATGTTGCATTAGTGG

Downstream 100 bases:

>100_bases
TTAAGTAAATTGTAACCTCTGCGCGAATTTTGCAGCAAAACCAATAAAATGAGTTAAAGTCAGCCTTGAATGCTTAATGC
AGGAGGGGCTAATGGCGATT

Product: transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator LysR Family Domain Protein

Number of amino acids: Translated: 307; Mature: 307

Protein sequence:

>307_residues
MIYLPSALMNRIMDIDQNASQVRKPPDSHALLHEMIRSFTTLARTLNLSHAVKELGSTRQTLRRHIALLEESKGVELFTV
KDRQYHLTEAGRRALPEAEEVLARGDAWLSGQSDVINGLQYLRHVEPDGWCHFQQQKPISEVFTSTGTILEEVMCAWAQA
RGELEHEAFQAVRPYCTVSRRHEGNWLFTEVGDQSSFVTWFGWKRARSSIGSALGQMPGGDGFGRLVNYAYEEIEATRSV
RLDHVFTLMPKGDEGVMMPICYERMLLGARYPDDSFAMITVVRRTYDVHINGVTHEMLRQMPEDMVM

Sequences:

>Translated_307_residues
MIYLPSALMNRIMDIDQNASQVRKPPDSHALLHEMIRSFTTLARTLNLSHAVKELGSTRQTLRRHIALLEESKGVELFTV
KDRQYHLTEAGRRALPEAEEVLARGDAWLSGQSDVINGLQYLRHVEPDGWCHFQQQKPISEVFTSTGTILEEVMCAWAQA
RGELEHEAFQAVRPYCTVSRRHEGNWLFTEVGDQSSFVTWFGWKRARSSIGSALGQMPGGDGFGRLVNYAYEEIEATRSV
RLDHVFTLMPKGDEGVMMPICYERMLLGARYPDDSFAMITVVRRTYDVHINGVTHEMLRQMPEDMVM
>Mature_307_residues
MIYLPSALMNRIMDIDQNASQVRKPPDSHALLHEMIRSFTTLARTLNLSHAVKELGSTRQTLRRHIALLEESKGVELFTV
KDRQYHLTEAGRRALPEAEEVLARGDAWLSGQSDVINGLQYLRHVEPDGWCHFQQQKPISEVFTSTGTILEEVMCAWAQA
RGELEHEAFQAVRPYCTVSRRHEGNWLFTEVGDQSSFVTWFGWKRARSSIGSALGQMPGGDGFGRLVNYAYEEIEATRSV
RLDHVFTLMPKGDEGVMMPICYERMLLGARYPDDSFAMITVVRRTYDVHINGVTHEMLRQMPEDMVM

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 35033; Mature: 35033

Theoretical pI: Translated: 6.38; Mature: 6.38

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIYLPSALMNRIMDIDQNASQVRKPPDSHALLHEMIRSFTTLARTLNLSHAVKELGSTRQ
CEECCHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLRRHIALLEESKGVELFTVKDRQYHLTEAGRRALPEAEEVLARGDAWLSGQSDVINGLQ
HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHH
YLRHVEPDGWCHFQQQKPISEVFTSTGTILEEVMCAWAQARGELEHEAFQAVRPYCTVSR
HHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHCC
RHEGNWLFTEVGDQSSFVTWFGWKRARSSIGSALGQMPGGDGFGRLVNYAYEEIEATRSV
CCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
RLDHVFTLMPKGDEGVMMPICYERMLLGARYPDDSFAMITVVRRTYDVHINGVTHEMLRQ
HHHHEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEECCCHHHHHHH
MPEDMVM
CHHHHCC
>Mature Secondary Structure
MIYLPSALMNRIMDIDQNASQVRKPPDSHALLHEMIRSFTTLARTLNLSHAVKELGSTRQ
CEECCHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLRRHIALLEESKGVELFTVKDRQYHLTEAGRRALPEAEEVLARGDAWLSGQSDVINGLQ
HHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCHHHHHHHH
YLRHVEPDGWCHFQQQKPISEVFTSTGTILEEVMCAWAQARGELEHEAFQAVRPYCTVSR
HHHHCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHCC
RHEGNWLFTEVGDQSSFVTWFGWKRARSSIGSALGQMPGGDGFGRLVNYAYEEIEATRSV
CCCCCEEEEECCCCCCEEEHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
RLDHVFTLMPKGDEGVMMPICYERMLLGARYPDDSFAMITVVRRTYDVHINGVTHEMLRQ
HHHHEEEEECCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHEEEECCCHHHHHHH
MPEDMVM
CHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA