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The map label for this gene is recO

Identifier: 110678689

GI number: 110678689

Start: 1315478

End: 1316203

Strand: Direct

Name: recO

Synonym: RD1_1369

Alternate gene names: 110678689

Gene position: 1315478-1316203 (Clockwise)

Preceding gene: 110678688

Following gene: 110678694

Centisome position: 31.83

GC content: 63.09

Gene sequence:

>726_bases
ATGGAATGGCGCGAGGAAGGCATATTGCTCAGCACGCGCCGCCATGGTGAAAGTGCCGCGATCATCGAAGTTTTTACCCC
CTCACATGGGCGTCATGCCGGGGTGGTGCGCGGTGGCACCAGCCGCAAGATCGCGCCGATCCTGCAACCAGGCGCGCAGC
TTGACCTGACCTGGCGCGCGCGGCTCGAAGATCACATCGGCAGTTTTCTCGTTGAACCCGTGCGCAGCCGCGCCGCCGCC
GCGATGGGGGACCGGCTGGCGCTCGCAGGCCTGAATGCGGTAACGGCGCTATTGGGGTTCTGCCTGCCGGAACGCGAAGC
GCATCGCCCATTATACGTTGAGACCGAGCGTTTGCTGGATCTGCTGGGGGAAGGGGAAATCTGGCCGCTGGCCTATCTGC
GCTGGGAGGTGCAGTTATTGCATGACATGGGCTATGCGCTGGCGCTTGAGGCATGTGCGGTAACGGGCCAGCGTGATGAT
CTGATCTATGTTTCCCCTAAAAGCGGTCGGGCGGTCTCTGCCAAGGGCGCGGGCGATTGGGCGGACCGTCTGTTGCCGCT
GCCGCCCATTTTGCGCGGAATCGGCGGTGGTCCGGATGCTGAAATCGCACAGGCGTTCATCACGACGGGGTATTTTCTGA
CCGAACATCTGGCACGGGACTTGGGCGGCAAGCCTCTGCCCGAAGCGCGGGCGCGTTTTGTCGAAACCTTCAGCCGTCGG
CTTTGA

Upstream 100 bases:

>100_bases
CGGCCATCGCGCGGCAACGCGGTTTTGACCCGGATCTCTGGGTGATCGAGGTTGAAGACCGCGCCGGGCGGCACCTGCTT
GATACACCCGGTTTGGCCTG

Downstream 100 bases:

>100_bases
AAATGATGCTGCGTCCTTCGGGCGTGGACAGGATCATCGTGTCACGCAGGATTTCCGACAGACTCATGTTTGCAAGCGCT
TCGAGGAAACGTGCCTCATG

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 241; Mature: 241

Protein sequence:

>241_residues
MEWREEGILLSTRRHGESAAIIEVFTPSHGRHAGVVRGGTSRKIAPILQPGAQLDLTWRARLEDHIGSFLVEPVRSRAAA
AMGDRLALAGLNAVTALLGFCLPEREAHRPLYVETERLLDLLGEGEIWPLAYLRWEVQLLHDMGYALALEACAVTGQRDD
LIYVSPKSGRAVSAKGAGDWADRLLPLPPILRGIGGGPDAEIAQAFITTGYFLTEHLARDLGGKPLPEARARFVETFSRR
L

Sequences:

>Translated_241_residues
MEWREEGILLSTRRHGESAAIIEVFTPSHGRHAGVVRGGTSRKIAPILQPGAQLDLTWRARLEDHIGSFLVEPVRSRAAA
AMGDRLALAGLNAVTALLGFCLPEREAHRPLYVETERLLDLLGEGEIWPLAYLRWEVQLLHDMGYALALEACAVTGQRDD
LIYVSPKSGRAVSAKGAGDWADRLLPLPPILRGIGGGPDAEIAQAFITTGYFLTEHLARDLGGKPLPEARARFVETFSRR
L
>Mature_241_residues
MEWREEGILLSTRRHGESAAIIEVFTPSHGRHAGVVRGGTSRKIAPILQPGAQLDLTWRARLEDHIGSFLVEPVRSRAAA
AMGDRLALAGLNAVTALLGFCLPEREAHRPLYVETERLLDLLGEGEIWPLAYLRWEVQLLHDMGYALALEACAVTGQRDD
LIYVSPKSGRAVSAKGAGDWADRLLPLPPILRGIGGGPDAEIAQAFITTGYFLTEHLARDLGGKPLPEARARFVETFSRR
L

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_ROSDO (Q16AI3)

Other databases:

- EMBL:   CP000362
- RefSeq:   YP_681696.1
- ProteinModelPortal:   Q16AI3
- STRING:   Q16AI3
- GeneID:   4197342
- GenomeReviews:   CP000362_GR
- KEGG:   rde:RD1_1369
- NMPDR:   fig|375451.6.peg.1282
- eggNOG:   COG1381
- HOGENOM:   HBG474229
- OMA:   PERDPHP
- ProtClustDB:   PRK00085
- BioCyc:   RDEN375451:RD1_1369-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 26387; Mature: 26387

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEWREEGILLSTRRHGESAAIIEVFTPSHGRHAGVVRGGTSRKIAPILQPGAQLDLTWRA
CCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCEEECCCCCCCHHHHCCCCCEEEHHHH
RLEDHIGSFLVEPVRSRAAAAMGDRLALAGLNAVTALLGFCLPEREAHRPLYVETERLLD
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHCCCCEEEEHHHHHH
LLGEGEIWPLAYLRWEVQLLHDMGYALALEACAVTGQRDDLIYVSPKSGRAVSAKGAGDW
HHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCHH
ADRLLPLPPILRGIGGGPDAEIAQAFITTGYFLTEHLARDLGGKPLPEARARFVETFSRR
HHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
L
C
>Mature Secondary Structure
MEWREEGILLSTRRHGESAAIIEVFTPSHGRHAGVVRGGTSRKIAPILQPGAQLDLTWRA
CCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCCEEECCCCCCCHHHHCCCCCEEEHHHH
RLEDHIGSFLVEPVRSRAAAAMGDRLALAGLNAVTALLGFCLPEREAHRPLYVETERLLD
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCHHCCCCEEEEHHHHHH
LLGEGEIWPLAYLRWEVQLLHDMGYALALEACAVTGQRDDLIYVSPKSGRAVSAKGAGDW
HHCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCEEEECCCCCCEEECCCCCHH
ADRLLPLPPILRGIGGGPDAEIAQAFITTGYFLTEHLARDLGGKPLPEARARFVETFSRR
HHHCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHC
L
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA