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The map label for this gene is 110678693

Identifier: 110678693

GI number: 110678693

Start: 1319209

End: 1319568

Strand: Reverse

Name: 110678693

Synonym: RD1_1373

Alternate gene names: NA

Gene position: 1319568-1319209 (Counterclockwise)

Preceding gene: 110678696

Following gene: 110678692

Centisome position: 31.93

GC content: 50.28

Gene sequence:

>360_bases
ATGTCTCATCCAGTTGATGCTCACGTTGGTCGCAAGCTTAAGCAGATCAGAACCATGCGCCGTTTGTCCCAGACAGATGT
TGCCCGGGAACTGAATTTGTCTTTTCAACAAATTCAGAAATACGAGATCGGGTCCAACCGAATTGCGGCAAGCCGGCTTT
ATGAATTGTCACGCATCTTCGACGTTCCGACCTCTTATTTCTTTGAGGGTCTCGACGCCGCAACCAAAACAACATGCGAA
CGCGATCCAAGCATGGAAATCGTGACCGCACTTGCAAACATCCGGGATGACAGCGTGAAATCGCGGATCGTGACCTTTAT
CGAAGATGTATCCGGCGTGACAGTGGCGCGCCAAGGTTAA

Upstream 100 bases:

>100_bases
GTAAATCTTTTGTCAAAAAAAAAGAAAAAGGTACTCAGTTGATCCAAACGGTGATTCCCGCGATGAGTGAAGCCAACGCA
GTAAAAGGGTTTAAAAAGTT

Downstream 100 bases:

>100_bases
GGCAATTTAACGGTTTTGCCGGCAGGTGGTTTCCCGGCCGGTGTGTTGAGGTTAGTATTTGTAACGATTAACGCCCGCGG
CTTGGTGCTGCGGGCTTTTT

Product: HTH-type transcriptional regulator, putative

Products: NA

Alternate protein names: URF4 [H]

Number of amino acids: Translated: 119; Mature: 118

Protein sequence:

>119_residues
MSHPVDAHVGRKLKQIRTMRRLSQTDVARELNLSFQQIQKYEIGSNRIAASRLYELSRIFDVPTSYFFEGLDAATKTTCE
RDPSMEIVTALANIRDDSVKSRIVTFIEDVSGVTVARQG

Sequences:

>Translated_119_residues
MSHPVDAHVGRKLKQIRTMRRLSQTDVARELNLSFQQIQKYEIGSNRIAASRLYELSRIFDVPTSYFFEGLDAATKTTCE
RDPSMEIVTALANIRDDSVKSRIVTFIEDVSGVTVARQG
>Mature_118_residues
SHPVDAHVGRKLKQIRTMRRLSQTDVARELNLSFQQIQKYEIGSNRIAASRLYELSRIFDVPTSYFFEGLDAATKTTCER
DPSMEIVTALANIRDDSVKSRIVTFIEDVSGVTVARQG

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 13464; Mature: 13333

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSHPVDAHVGRKLKQIRTMRRLSQTDVARELNLSFQQIQKYEIGSNRIAASRLYELSRIF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
DVPTSYFFEGLDAATKTTCERDPSMEIVTALANIRDDSVKSRIVTFIEDVSGVTVARQG
HCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEECCC
>Mature Secondary Structure 
SHPVDAHVGRKLKQIRTMRRLSQTDVARELNLSFQQIQKYEIGSNRIAASRLYELSRIF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHH
DVPTSYFFEGLDAATKTTCERDPSMEIVTALANIRDDSVKSRIVTFIEDVSGVTVARQG
HCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2902844 [H]