| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is yqjG [H]
Identifier: 110678655
GI number: 110678655
Start: 1284615
End: 1285589
Strand: Reverse
Name: yqjG [H]
Synonym: RD1_1334
Alternate gene names: 110678655
Gene position: 1285589-1284615 (Counterclockwise)
Preceding gene: 110678657
Following gene: 110678653
Centisome position: 31.1
GC content: 57.85
Gene sequence:
>975_bases ATGGGTCTTTTGATTGACGGCGTTTGGCATGACCAGTGGTATGATACCAAATCCACGGGCGGGTCCTTTAAACGCCAGGA CGCGAAGTTTCGTAACTGGATCACCCATGACGGGAGTGCGGGGCCATCAGGCACAGGCGGCTTCACCCCCGATTCGGGCC GCTATCATCTCTACATCAGCCATGCCTGCCCCTGGGCGCACCGCACCATGATCTTTCGCACGCTCAAAGGTCTTGAGGAT CACATCACCATCTCCGCCGTCCATCCTGATATGCTGGGCGAAGGCTGGACCTTTGAACCCGATGACAATGGTGCCACCGG TGACACCCTCTACAACAGCGCCTTTGCACGCGACATCTACACCCGCGCCGATCCCAGGTTTACCGGCCGCGTCACCGTGC CGATCCTCTGGGACAAACAGCGCGAAACCATCGTCTCGAACGAAAGCTCCGAGATCATCCGTATGTTCAACGCAGCCTTC AACGGACTGACCGGAAACAGCGATGACTATTGGCCCGAACCCCTGCGCGACGCCATCGCCCCGGTGAACGAGCGCATCTA CGACACCTTCAACAACGGTGTGTACAAGGCGGGTTTTGCCACGACGCAACAGGCCTATGATGCGGCGATTGTCCCCCTGT TCGACACCCTCGACTGGCTCGAAGAGCGCCTGTCACACAACCGATACCTCATGGGCGACCAGCTGACAGAGGCAGACTGG CGGCTGTTTACCACGCTTGTGCGCTTTGATCCGGTCTATCATCTGCATTTCAAATGCAACCGCAAGCGCATCGTGGATTA TCCAAACCTGTGGGGATACACGCGCGAACTCTATCAGACGCCCGGCGTTGCCGACACGGTCAACTTCGATCATATCGTGC GCCACTATCACTACAGCCACGAAACGATCAATCCGAACCGGATCATCCCGATCAACCCGGTTCTGGATTTTCACAGACCC CACGGGCGCGGCTGA
Upstream 100 bases:
>100_bases CTCAGAGTTGTGCAGCAATGCACCAATCCTGCGCGAAGCGGATTGTGGGCCTCTTTGAATCAATGGCTTACGATTGGCCC AACCGAAAAGGAGAGGTGAC
Downstream 100 bases:
>100_bases GCCTGCCGCACCCGGCGGTGCGCAGCGGTACCTGCCGGGTGAATAAAAAATGTCGTGCGCCGCAGGCGCGCCTTTGGATC ACGCGACGCCGTGGGGTGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 324; Mature: 323
Protein sequence:
>324_residues MGLLIDGVWHDQWYDTKSTGGSFKRQDAKFRNWITHDGSAGPSGTGGFTPDSGRYHLYISHACPWAHRTMIFRTLKGLED HITISAVHPDMLGEGWTFEPDDNGATGDTLYNSAFARDIYTRADPRFTGRVTVPILWDKQRETIVSNESSEIIRMFNAAF NGLTGNSDDYWPEPLRDAIAPVNERIYDTFNNGVYKAGFATTQQAYDAAIVPLFDTLDWLEERLSHNRYLMGDQLTEADW RLFTTLVRFDPVYHLHFKCNRKRIVDYPNLWGYTRELYQTPGVADTVNFDHIVRHYHYSHETINPNRIIPINPVLDFHRP HGRG
Sequences:
>Translated_324_residues MGLLIDGVWHDQWYDTKSTGGSFKRQDAKFRNWITHDGSAGPSGTGGFTPDSGRYHLYISHACPWAHRTMIFRTLKGLED HITISAVHPDMLGEGWTFEPDDNGATGDTLYNSAFARDIYTRADPRFTGRVTVPILWDKQRETIVSNESSEIIRMFNAAF NGLTGNSDDYWPEPLRDAIAPVNERIYDTFNNGVYKAGFATTQQAYDAAIVPLFDTLDWLEERLSHNRYLMGDQLTEADW RLFTTLVRFDPVYHLHFKCNRKRIVDYPNLWGYTRELYQTPGVADTVNFDHIVRHYHYSHETINPNRIIPINPVLDFHRP HGRG >Mature_323_residues GLLIDGVWHDQWYDTKSTGGSFKRQDAKFRNWITHDGSAGPSGTGGFTPDSGRYHLYISHACPWAHRTMIFRTLKGLEDH ITISAVHPDMLGEGWTFEPDDNGATGDTLYNSAFARDIYTRADPRFTGRVTVPILWDKQRETIVSNESSEIIRMFNAAFN GLTGNSDDYWPEPLRDAIAPVNERIYDTFNNGVYKAGFATTQQAYDAAIVPLFDTLDWLEERLSHNRYLMGDQLTEADWR LFTTLVRFDPVYHLHFKCNRKRIVDYPNLWGYTRELYQTPGVADTVNFDHIVRHYHYSHETINPNRIIPINPVLDFHRPH GRG
Specific function: Unknown
COG id: COG0435
COG function: function code O; Predicted glutathione S-transferase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 GST C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1789489, Length=323, Percent_Identity=61.9195046439629, Blast_Score=399, Evalue=1e-112, Organism=Saccharomyces cerevisiae, GI6322929, Length=376, Percent_Identity=36.7021276595745, Blast_Score=202, Evalue=5e-53, Organism=Saccharomyces cerevisiae, GI6323906, Length=363, Percent_Identity=34.9862258953168, Blast_Score=176, Evalue=3e-45, Organism=Saccharomyces cerevisiae, GI6321593, Length=340, Percent_Identity=30, Blast_Score=133, Evalue=4e-32,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010987 - InterPro: IPR017933 - InterPro: IPR004046 - InterPro: IPR016639 - InterPro: IPR012336 - InterPro: IPR012335 [H]
Pfam domain/function: PF00043 GST_C [H]
EC number: NA
Molecular weight: Translated: 37346; Mature: 37215
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLLIDGVWHDQWYDTKSTGGSFKRQDAKFRNWITHDGSAGPSGTGGFTPDSGRYHLYIS CCEEEECEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEE HACPWAHRTMIFRTLKGLEDHITISAVHPDMLGEGWTFEPDDNGATGDTLYNSAFARDIY CCCCHHHHHHHHHHHHCCHHCEEEEEECHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHH TRADPRFTGRVTVPILWDKQRETIVSNESSEIIRMFNAAFNGLTGNSDDYWPEPLRDAIA HCCCCCEECEEEEEEEECCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH PVNERIYDTFNNGVYKAGFATTQQAYDAAIVPLFDTLDWLEERLSHNRYLMGDQLTEADW HHHHHHHHHHCCCEEECCCCHHHHHHCEEEHHHHHHHHHHHHHHCCCCEEECCCCCHHHH RLFTTLVRFDPVYHLHFKCNRKRIVDYPNLWGYTRELYQTPGVADTVNFDHIVRHYHYSH HHHHHHHHHCCEEEEEEEECCCEECCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCC ETINPNRIIPINPVLDFHRPHGRG CCCCCCEEEECCCCCCCCCCCCCC >Mature Secondary Structure GLLIDGVWHDQWYDTKSTGGSFKRQDAKFRNWITHDGSAGPSGTGGFTPDSGRYHLYIS CEEEECEECCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEEE HACPWAHRTMIFRTLKGLEDHITISAVHPDMLGEGWTFEPDDNGATGDTLYNSAFARDIY CCCCHHHHHHHHHHHHCCHHCEEEEEECHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHH TRADPRFTGRVTVPILWDKQRETIVSNESSEIIRMFNAAFNGLTGNSDDYWPEPLRDAIA HCCCCCEECEEEEEEEECCCCHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHH PVNERIYDTFNNGVYKAGFATTQQAYDAAIVPLFDTLDWLEERLSHNRYLMGDQLTEADW HHHHHHHHHHCCCEEECCCCHHHHHHCEEEHHHHHHHHHHHHHHCCCCEEECCCCCHHHH RLFTTLVRFDPVYHLHFKCNRKRIVDYPNLWGYTRELYQTPGVADTVNFDHIVRHYHYSH HHHHHHHHHCCEEEEEEEECCCEECCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCC ETINPNRIIPINPVLDFHRPHGRG CCCCCCEEEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503 [H]