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The map label for this gene is sdpR [H]

Identifier: 110678642

GI number: 110678642

Start: 1272642

End: 1273214

Strand: Reverse

Name: sdpR [H]

Synonym: RD1_1319

Alternate gene names: 110678642

Gene position: 1273214-1272642 (Counterclockwise)

Preceding gene: 110678648

Following gene: 110678639

Centisome position: 30.81

GC content: 59.16

Gene sequence:

>573_bases
TTGCCCCTTCAGGGAGTTGCCCTGTGCTACGGTGCAGCGTGGCGTGAGTCAACCGGCTTTGACAGAAGCGGAAAACTGGC
ACAACATATTGTTTTCATGTCATATTACCAAGCACCGCCATCAACGGGTCACCCTGTCGCAGGCGCGAAAATCCCCTCAT
GGCGCCAAATGGGATATTCAACCATTTGGTTGACGTTTGACATGCAAAGGTGCAGATCGGGCGGCATGACACGCGACCTC
GATCAGGTTTTTGCAGCCCTTGCAGACCCGACCCGTCGGGCCATCCTCGCCATGTTGCTGGAGGATGATATGGCCGTGAC
CGATGTTGCCGACCCCTTCGAGATGTCGCTCGCCGCGATCTCGAAACATCTGCGCGTGCTGACGCAGGCGGGGCTGATCT
CCCAGGAAAAACGCGGCCGCGTGAAATGGTGCAAGCTTGAGCCGGACGCCCTGCGCGACGCTTCGGTCTGGATGCAGGGG
TTTGGTCAGTTCGAACCCGTCAACCTCGACGCCTTCGAACGCTTTCTCGCCACAGAGGTGCACGCCCCCGAGGGCCGCGA
TGAAAGCGTCTGA

Upstream 100 bases:

>100_bases
ATCCGATCGGGGGCCGGGCTCTTGTGCCTTTTTCGCGGCGGCGATTTTGGCCTCTAGCTGCTCAAGGCGCTGCTGTTGGT
CAGGATCTGTCACGCGCAAA

Downstream 100 bases:

>100_bases
CGAAACACCAGAAACATGAAAAACTACGTGCCGCGTCGAAATCTTTGATTTCAGGCAGCATGACGCGATTCAGGTTCCTC
GCCTGACGCGTCAGCGGCGC

Product: ArsR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MPLQGVALCYGAAWRESTGFDRSGKLAQHIVFMSYYQAPPSTGHPVAGAKIPSWRQMGYSTIWLTFDMQRCRSGGMTRDL
DQVFAALADPTRRAILAMLLEDDMAVTDVADPFEMSLAAISKHLRVLTQAGLISQEKRGRVKWCKLEPDALRDASVWMQG
FGQFEPVNLDAFERFLATEVHAPEGRDESV

Sequences:

>Translated_190_residues
MPLQGVALCYGAAWRESTGFDRSGKLAQHIVFMSYYQAPPSTGHPVAGAKIPSWRQMGYSTIWLTFDMQRCRSGGMTRDL
DQVFAALADPTRRAILAMLLEDDMAVTDVADPFEMSLAAISKHLRVLTQAGLISQEKRGRVKWCKLEPDALRDASVWMQG
FGQFEPVNLDAFERFLATEVHAPEGRDESV
>Mature_189_residues
PLQGVALCYGAAWRESTGFDRSGKLAQHIVFMSYYQAPPSTGHPVAGAKIPSWRQMGYSTIWLTFDMQRCRSGGMTRDLD
QVFAALADPTRRAILAMLLEDDMAVTDVADPFEMSLAAISKHLRVLTQAGLISQEKRGRVKWCKLEPDALRDASVWMQGF
GQFEPVNLDAFERFLATEVHAPEGRDESV

Specific function: Represses the transcription of the sdpIR operon and of several other operons that probably contribute to delaying commitment to sporulation [H]

COG id: COG0640

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH arsR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001845
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 21184; Mature: 21053

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS50987 HTH_ARSR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLQGVALCYGAAWRESTGFDRSGKLAQHIVFMSYYQAPPSTGHPVAGAKIPSWRQMGYS
CCCCHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCE
TIWLTFDMQRCRSGGMTRDLDQVFAALADPTRRAILAMLLEDDMAVTDVADPFEMSLAAI
EEEEEEEHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHH
SKHLRVLTQAGLISQEKRGRVKWCKLEPDALRDASVWMQGFGQFEPVNLDAFERFLATEV
HHHHHHHHHHHHHCHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
HAPEGRDESV
CCCCCCCCCC
>Mature Secondary Structure 
PLQGVALCYGAAWRESTGFDRSGKLAQHIVFMSYYQAPPSTGHPVAGAKIPSWRQMGYS
CCCHHHHHHCCHHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHCCCE
TIWLTFDMQRCRSGGMTRDLDQVFAALADPTRRAILAMLLEDDMAVTDVADPFEMSLAAI
EEEEEEEHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHH
SKHLRVLTQAGLISQEKRGRVKWCKLEPDALRDASVWMQGFGQFEPVNLDAFERFLATEV
HHHHHHHHHHHHHCHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHC
HAPEGRDESV
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]