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The map label for this gene is rimM

Identifier: 110678632

GI number: 110678632

Start: 1265614

End: 1266120

Strand: Reverse

Name: rimM

Synonym: RD1_1308

Alternate gene names: 110678632

Gene position: 1266120-1265614 (Counterclockwise)

Preceding gene: 110678633

Following gene: 110678631

Centisome position: 30.63

GC content: 59.76

Gene sequence:

>507_bases
ATGAGCGACGAGAAAATCTGTGTCGGTGCCATTGCCGGCGCCTATGGTGTGCGTGGCGAATTGCGCATCAAGAGTTTCTG
TGCAACCGCCGAAGACATCGAAACCTATAGCCCTCTGACCAGCGAGGACGGGCAACGTCATTTCCACCTTGCGCTCGTGC
GTCCGATCAAAGGCGGCTTTGTCGCGCGGATCGCAGAAGTGAGCAGCAAGGAAGAGGCGGATGCGCTGAAGGGCGTACAA
CTCTTTGCGCTGCGTGATCAATTGCCGTCCCTGCCCGATGATGAATACTACTATACCGACCTGATTGGCCTGCAAGTCCT
TGATACCGGGGGGGAACTGCTCGGCAGCGTCAAGACCGTCGCCGATCACGGGGCGGGCGATATTCTCGAAGTGCAGCGGC
CCGGCACGTCCGAGACCATACTGCTGCCCTTCACCCGCGCTGTTGTTCCCACCGTCGATCTGCTCGCAGGGAAACTCATT
GCCGATCCGCCAGAGGGGGCGCTCTGA

Upstream 100 bases:

>100_bases
CAGCCTTTCTTGCCGGGCTGCTGTTTGAGCGAAACAACACATCGGAAAAATGCCGAACCGCCGGTGGCACGATGGATGCC
GGCCTATGCAGGAACGTACC

Downstream 100 bases:

>100_bases
GGTGGTGCAGGCACCAAAAAGCCACGGCCGCAAGACCATCCGCCCGACGCGCACCCCAAGCGCGCTGATGGCAGCGGACG
AAGAGCTGTCAGGCGTCTGG

Product: 16S rRNA-processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MSDEKICVGAIAGAYGVRGELRIKSFCATAEDIETYSPLTSEDGQRHFHLALVRPIKGGFVARIAEVSSKEEADALKGVQ
LFALRDQLPSLPDDEYYYTDLIGLQVLDTGGELLGSVKTVADHGAGDILEVQRPGTSETILLPFTRAVVPTVDLLAGKLI
ADPPEGAL

Sequences:

>Translated_168_residues
MSDEKICVGAIAGAYGVRGELRIKSFCATAEDIETYSPLTSEDGQRHFHLALVRPIKGGFVARIAEVSSKEEADALKGVQ
LFALRDQLPSLPDDEYYYTDLIGLQVLDTGGELLGSVKTVADHGAGDILEVQRPGTSETILLPFTRAVVPTVDLLAGKLI
ADPPEGAL
>Mature_167_residues
SDEKICVGAIAGAYGVRGELRIKSFCATAEDIETYSPLTSEDGQRHFHLALVRPIKGGFVARIAEVSSKEEADALKGVQL
FALRDQLPSLPDDEYYYTDLIGLQVLDTGGELLGSVKTVADHGAGDILEVQRPGTSETILLPFTRAVVPTVDLLAGKLIA
DPPEGAL

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=169, Percent_Identity=29.585798816568, Blast_Score=69, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_ROSDO (Q16AP0)

Other databases:

- EMBL:   CP000362
- RefSeq:   YP_681639.1
- ProteinModelPortal:   Q16AP0
- SMR:   Q16AP0
- STRING:   Q16AP0
- GeneID:   4197402
- GenomeReviews:   CP000362_GR
- KEGG:   rde:RD1_1308
- NMPDR:   fig|375451.6.peg.1225
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   KNILNFG
- PhylomeDB:   Q16AP0
- ProtClustDB:   PRK13828
- BioCyc:   RDEN375451:RD1_1308-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 17925; Mature: 17793

Theoretical pI: Translated: 4.37; Mature: 4.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDEKICVGAIAGAYGVRGELRIKSFCATAEDIETYSPLTSEDGQRHFHLALVRPIKGGF
CCCCCEEEEEEHHCCCCCCCEEHHHHHCCHHHHHHCCCCCCCCCCEEEEEEEEEECCCCH
VARIAEVSSKEEADALKGVQLFALRDQLPSLPDDEYYYTDLIGLQVLDTGGELLGSVKTV
HHHHHHHCCCHHHHHHCCCCEEEEHHHCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHH
ADHGAGDILEVQRPGTSETILLPFTRAVVPTVDLLAGKLIADPPEGAL
HHCCCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHHCHHCCCCCCCCC
>Mature Secondary Structure 
SDEKICVGAIAGAYGVRGELRIKSFCATAEDIETYSPLTSEDGQRHFHLALVRPIKGGF
CCCCEEEEEEHHCCCCCCCEEHHHHHCCHHHHHHCCCCCCCCCCEEEEEEEEEECCCCH
VARIAEVSSKEEADALKGVQLFALRDQLPSLPDDEYYYTDLIGLQVLDTGGELLGSVKTV
HHHHHHHCCCHHHHHHCCCCEEEEHHHCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHH
ADHGAGDILEVQRPGTSETILLPFTRAVVPTVDLLAGKLIADPPEGAL
HHCCCCCEEEEECCCCCCEEEEEEHHHHHHHHHHHHCHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA