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The map label for this gene is rsmC [H]

Identifier: 110678605

GI number: 110678605

Start: 1242906

End: 1243856

Strand: Direct

Name: rsmC [H]

Synonym: RD1_1280

Alternate gene names: 110678605

Gene position: 1242906-1243856 (Clockwise)

Preceding gene: 110678604

Following gene: 110678606

Centisome position: 30.07

GC content: 61.2

Gene sequence:

>951_bases
GTGCTGCCTGACGCCGGCCAAATCACGGTTGTTAAGCCGCCGCTTGACGCGCGACTTATGGAACTGCCGCGTGATCGGAC
GTGCATTGTCGAGGGATTCAAACCGGCCCATGAGGCGTGGAAAGCGCGCGGATACCCCTGTGAGGCGGAGTTTGGCGGAT
CACATGCCACCACCATCATCTGTCTGCCGCGCGCCAAGAAAGATGCGCGCGCCTTGATTGCGCAAGCTATGGCGCCGGGC
GCGGAAATGGTCATCATTGACGGTCAAAAAACCGACGGTATCGACAGCATTCTGCGGGACATGCGCAAGCGTGTGGAGGT
TTCCGCGCCGATCTCCAAGGCCCATGGCAAGCTTTTCTGGTGTATGGCACCGGATGCGGAACTTTTTGAAGACTGGCGGG
ATGGGCCGGCCTTGACCGAGGGTGGGTTCTGGACCGCGCCTGGTGTTTTTTCGGCGGATGCGATTGATCCGGCCTCCGCC
CTGCTGGTGGATGCGCTGCCGGATAAACTGGGGCATGAGGTTGCTGACCTTGGCGCGGGGTGGGGGTTTTTGTCTGCCCA
TATCTTGACCCGTGCGGATGTCGAAGCGGTGCACCTCGTGGAGGCGGAGCATATGGCGCTCGAATGCGCACGGCGAAATG
TCACTGACCCGCGCGCTGTCTTCCACTGGGCCGATGCCACCGCGTGGACGCCCGGGCGCAAAGTGGATGCCGTGGTGATG
AACCCGCCGTTTCATACATCCCGCACGGCTGATCCCGCATTGGGGCAGGCGTTTGTGCGGGCAGCGGCGGCGATGCTCAA
GCCGCAGGGGCAGCTCTGGATGGTGGCAAACCGTCATTTGCCCTACGAGCAATGCCTGCAAGACAGCTTTGCAAATTGCT
TTGAAATTGGTGGTGATACGCGCTTTAAACTGTTCCATGCAGCGCGCCCCAAACGACAGGTCCGGCGCTAG

Upstream 100 bases:

>100_bases
GCGCGTCGCCACCAGCATCCGCTGCAGTGCACAATGGAAAAAGAAGAGTAAGCAGGTGATCGACGCCCGTCTGGTGCTGG
CGCTGAGCGAGGGTGGTCTG

Downstream 100 bases:

>100_bases
GCTGGCTATCCCGAAAGGAGACTCATGTCTTTTTCCATCAGTGGCAAAACGGCGATCGTAACAGGCGCGGCGAACGGCAT
CGGTTTGGCGATCGCCCGGC

Product: ribosomal RNA small subunit methyltransferase C, putative

Products: NA

Alternate protein names: 16S rRNA m2G1207 methyltransferase; rRNA (guanine-N(2)-)-methyltransferase rsmC [H]

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MLPDAGQITVVKPPLDARLMELPRDRTCIVEGFKPAHEAWKARGYPCEAEFGGSHATTIICLPRAKKDARALIAQAMAPG
AEMVIIDGQKTDGIDSILRDMRKRVEVSAPISKAHGKLFWCMAPDAELFEDWRDGPALTEGGFWTAPGVFSADAIDPASA
LLVDALPDKLGHEVADLGAGWGFLSAHILTRADVEAVHLVEAEHMALECARRNVTDPRAVFHWADATAWTPGRKVDAVVM
NPPFHTSRTADPALGQAFVRAAAAMLKPQGQLWMVANRHLPYEQCLQDSFANCFEIGGDTRFKLFHAARPKRQVRR

Sequences:

>Translated_316_residues
MLPDAGQITVVKPPLDARLMELPRDRTCIVEGFKPAHEAWKARGYPCEAEFGGSHATTIICLPRAKKDARALIAQAMAPG
AEMVIIDGQKTDGIDSILRDMRKRVEVSAPISKAHGKLFWCMAPDAELFEDWRDGPALTEGGFWTAPGVFSADAIDPASA
LLVDALPDKLGHEVADLGAGWGFLSAHILTRADVEAVHLVEAEHMALECARRNVTDPRAVFHWADATAWTPGRKVDAVVM
NPPFHTSRTADPALGQAFVRAAAAMLKPQGQLWMVANRHLPYEQCLQDSFANCFEIGGDTRFKLFHAARPKRQVRR
>Mature_316_residues
MLPDAGQITVVKPPLDARLMELPRDRTCIVEGFKPAHEAWKARGYPCEAEFGGSHATTIICLPRAKKDARALIAQAMAPG
AEMVIIDGQKTDGIDSILRDMRKRVEVSAPISKAHGKLFWCMAPDAELFEDWRDGPALTEGGFWTAPGVFSADAIDPASA
LLVDALPDKLGHEVADLGAGWGFLSAHILTRADVEAVHLVEAEHMALECARRNVTDPRAVFHWADATAWTPGRKVDAVVM
NPPFHTSRTADPALGQAFVRAAAAMLKPQGQLWMVANRHLPYEQCLQDSFANCFEIGGDTRFKLFHAARPKRQVRR

Specific function: Specifically methylates the guanosine in position 1207 of 16S rRNA in the 30S particle [H]

COG id: COG2813

COG function: function code J; 16S RNA G1207 methylase RsmC

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmC family [H]

Homologues:

Organism=Escherichia coli, GI87082206, Length=183, Percent_Identity=30.0546448087432, Blast_Score=85, Evalue=7e-18,
Organism=Escherichia coli, GI1790830, Length=271, Percent_Identity=26.1992619926199, Blast_Score=73, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002052
- InterPro:   IPR013675
- InterPro:   IPR002296
- InterPro:   IPR007848 [H]

Pfam domain/function: PF05175 MTS; PF08468 MTS_N [H]

EC number: =2.1.1.172 [H]

Molecular weight: Translated: 34632; Mature: 34632

Theoretical pI: Translated: 6.90; Mature: 6.90

Prosite motif: PS00092 N6_MTASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLPDAGQITVVKPPLDARLMELPRDRTCIVEGFKPAHEAWKARGYPCEAEFGGSHATTII
CCCCCCCEEEECCCCCHHHHHCCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCEEEE
CLPRAKKDARALIAQAMAPGAEMVIIDGQKTDGIDSILRDMRKRVEVSAPISKAHGKLFW
EECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCEEE
CMAPDAELFEDWRDGPALTEGGFWTAPGVFSADAIDPASALLVDALPDKLGHEVADLGAG
EECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
WGFLSAHILTRADVEAVHLVEAEHMALECARRNVTDPRAVFHWADATAWTPGRKVDAVVM
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHEEEECCCCCCCCCCCEEEEEE
NPPFHTSRTADPALGQAFVRAAAAMLKPQGQLWMVANRHLPYEQCLQDSFANCFEIGGDT
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC
RFKLFHAARPKRQVRR
EEEEEECCCCHHHHCC
>Mature Secondary Structure
MLPDAGQITVVKPPLDARLMELPRDRTCIVEGFKPAHEAWKARGYPCEAEFGGSHATTII
CCCCCCCEEEECCCCCHHHHHCCCCCEEEEECCCHHHHHHHCCCCCCCCCCCCCCCEEEE
CLPRAKKDARALIAQAMAPGAEMVIIDGQKTDGIDSILRDMRKRVEVSAPISKAHGKLFW
EECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCEEE
CMAPDAELFEDWRDGPALTEGGFWTAPGVFSADAIDPASALLVDALPDKLGHEVADLGAG
EECCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
WGFLSAHILTRADVEAVHLVEAEHMALECARRNVTDPRAVFHWADATAWTPGRKVDAVVM
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCHHEEEECCCCCCCCCCCEEEEEE
NPPFHTSRTADPALGQAFVRAAAAMLKPQGQLWMVANRHLPYEQCLQDSFANCFEIGGDT
CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCC
RFKLFHAARPKRQVRR
EEEEEECCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA