BacMap

Definition	Roseobacter denitrificans OCh 114, complete genome.
Accession	NC_008209
Length	4,133,097

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The map label for this gene is yhdF [H]

Identifier: 110678606

GI number: 110678606

Start: 1243881

End: 1244681

Strand: Direct

Name: yhdF [H]

Synonym: RD1_1281

Alternate gene names: 110678606

Gene position: 1243881-1244681 (Clockwise)

Preceding gene: 110678605

Following gene: 110678607

Centisome position: 30.1

GC content: 57.18

Gene sequence:

>801_bases
ATGTCTTTTTCCATCAGTGGCAAAACGGCGATCGTAACAGGCGCGGCGAACGGCATCGGTTTGGCGATCGCCCGGCAATT
TGCAGATCGTGGCGCGAATGTGATGTGTGCCGATATCGACGAAAGGAGGCTCGCCGAAGAGTGGGGCGATCTGTCCGAAG
ACAGTAATCTGCGTTACTTCGGCGGTGATTTGCGCCAGCGTCTGACAATCGCCAATCTGGTTTCGGCGACGATTGATAGC
TTTGACCGGGTCGATATTCTGGTCAACGCATCGCGGCAGGTGCTTGAAACGGATGCGCTGGACTTTGAGGACACATCGGT
TTCGATTTTGCTGGAACAGAACCTTATGACAGCACTGCATCTGACACAACAGGTCGCGAAAAGGATGATAAAGCAGGGGG
TTGACCAGCCAGAGGGTCAATGTGGATCAATCATCAATCTCAGTTCAATTACCGCCCGCACCACGCGCCCGGAGTTGATG
GGCTATTCCATCGCCTCTGCCGCGCTTGAGCAGATGACCCGCTCCATGGCGCTGGTTCTGGCGCCTGAGCGCATCCGCGT
GAATGCCATCGCCTTCGGGTCGGTGATGAGTGCATCGCTGAAAACCTCGATGAGCGAACATAGTGAGTGGCGCGATGAAA
TTCGCAATCAAACGCCGCTGGCGCGCATTGCGGGCCCGGCTGAACTGTCTGATGCTGTCCAGTTTCTTGCGGCAGAGAGT
TCAAGCTTCATGACCGGGGAAGTCATGACGGTCGACGGCGGGCGCAGCCTGCTGGATGCGGTCGCGGTGCCGGCGCACTG
A

Upstream 100 bases:

>100_bases
TTGCTTTGAAATTGGTGGTGATACGCGCTTTAAACTGTTCCATGCAGCGCGCCCCAAACGACAGGTCCGGCGCTAGGCTG
GCTATCCCGAAAGGAGACTC

Downstream 100 bases:

>100_bases
CAATTGCGCTTGGAATGCCGTGGAAAAGCGGTTTAGAGATGGTGTCAGGATAAACTGACACATTAGGCTGCACTATGACC
ACAGACTACGATACGGAAAA

Product: oxidoreductase, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 265

Protein sequence:

>266_residues
MSFSISGKTAIVTGAANGIGLAIARQFADRGANVMCADIDERRLAEEWGDLSEDSNLRYFGGDLRQRLTIANLVSATIDS
FDRVDILVNASRQVLETDALDFEDTSVSILLEQNLMTALHLTQQVAKRMIKQGVDQPEGQCGSIINLSSITARTTRPELM
GYSIASAALEQMTRSMALVLAPERIRVNAIAFGSVMSASLKTSMSEHSEWRDEIRNQTPLARIAGPAELSDAVQFLAAES
SSFMTGEVMTVDGGRSLLDAVAVPAH

Sequences:

>Translated_266_residues
MSFSISGKTAIVTGAANGIGLAIARQFADRGANVMCADIDERRLAEEWGDLSEDSNLRYFGGDLRQRLTIANLVSATIDS
FDRVDILVNASRQVLETDALDFEDTSVSILLEQNLMTALHLTQQVAKRMIKQGVDQPEGQCGSIINLSSITARTTRPELM
GYSIASAALEQMTRSMALVLAPERIRVNAIAFGSVMSASLKTSMSEHSEWRDEIRNQTPLARIAGPAELSDAVQFLAAES
SSFMTGEVMTVDGGRSLLDAVAVPAH
>Mature_265_residues
SFSISGKTAIVTGAANGIGLAIARQFADRGANVMCADIDERRLAEEWGDLSEDSNLRYFGGDLRQRLTIANLVSATIDSF
DRVDILVNASRQVLETDALDFEDTSVSILLEQNLMTALHLTQQVAKRMIKQGVDQPEGQCGSIINLSSITARTTRPELMG
YSIASAALEQMTRSMALVLAPERIRVNAIAFGSVMSASLKTSMSEHSEWRDEIRNQTPLARIAGPAELSDAVQFLAAESS
SFMTGEVMTVDGGRSLLDAVAVPAH

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI19923817, Length=273, Percent_Identity=28.9377289377289, Blast_Score=111, Evalue=6e-25,
Organism=Homo sapiens, GI32483357, Length=257, Percent_Identity=28.4046692607004, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI4758504, Length=257, Percent_Identity=28.7937743190661, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI7705925, Length=261, Percent_Identity=27.9693486590038, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI5031737, Length=260, Percent_Identity=26.1538461538462, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI59889578, Length=245, Percent_Identity=29.7959183673469, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI40254992, Length=255, Percent_Identity=28.6274509803922, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI15277342, Length=257, Percent_Identity=27.2373540856031, Blast_Score=78, Evalue=9e-15,
Organism=Homo sapiens, GI10190704, Length=252, Percent_Identity=23.8095238095238, Blast_Score=74, Evalue=2e-13,
Organism=Homo sapiens, GI83715985, Length=257, Percent_Identity=26.4591439688716, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI66933014, Length=261, Percent_Identity=27.9693486590038, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI126723750, Length=259, Percent_Identity=24.7104247104247, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI31542939, Length=261, Percent_Identity=26.8199233716475, Blast_Score=67, Evalue=1e-11,
Organism=Escherichia coli, GI87082100, Length=269, Percent_Identity=30.8550185873606, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1787905, Length=261, Percent_Identity=29.5019157088123, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1789208, Length=257, Percent_Identity=29.9610894941634, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1789378, Length=259, Percent_Identity=30.1158301158301, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1790717, Length=256, Percent_Identity=25.78125, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787335, Length=267, Percent_Identity=28.8389513108614, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI87082160, Length=257, Percent_Identity=28.7937743190661, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1788459, Length=259, Percent_Identity=28.1853281853282, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1786812, Length=262, Percent_Identity=28.6259541984733, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI2367365, Length=256, Percent_Identity=27.34375, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI2367175, Length=253, Percent_Identity=24.901185770751, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1789057, Length=267, Percent_Identity=22.4719101123595, Blast_Score=66, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17560332, Length=272, Percent_Identity=33.0882352941176, Blast_Score=109, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI193204405, Length=275, Percent_Identity=29.8181818181818, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17531453, Length=278, Percent_Identity=32.0143884892086, Blast_Score=108, Evalue=4e-24,
Organism=Caenorhabditis elegans, GI17562906, Length=271, Percent_Identity=29.520295202952, Blast_Score=103, Evalue=1e-22,
Organism=Caenorhabditis elegans, GI17562908, Length=273, Percent_Identity=29.6703296703297, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI71994604, Length=256, Percent_Identity=28.515625, Blast_Score=101, Evalue=4e-22,
Organism=Caenorhabditis elegans, GI17560676, Length=259, Percent_Identity=28.5714285714286, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17561402, Length=263, Percent_Identity=30.4182509505703, Blast_Score=99, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI17562910, Length=278, Percent_Identity=26.978417266187, Blast_Score=97, Evalue=6e-21,
Organism=Caenorhabditis elegans, GI17559104, Length=269, Percent_Identity=31.2267657992565, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI25147288, Length=259, Percent_Identity=29.7297297297297, Blast_Score=95, Evalue=4e-20,
Organism=Caenorhabditis elegans, GI17538480, Length=275, Percent_Identity=29.8181818181818, Blast_Score=94, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17562904, Length=278, Percent_Identity=28.7769784172662, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17551412, Length=284, Percent_Identity=29.2253521126761, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI71994600, Length=258, Percent_Identity=26.3565891472868, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17560220, Length=271, Percent_Identity=28.4132841328413, Blast_Score=92, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17560150, Length=274, Percent_Identity=28.1021897810219, Blast_Score=90, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17562990, Length=271, Percent_Identity=28.0442804428044, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17555706, Length=252, Percent_Identity=28.1746031746032, Blast_Score=87, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17536025, Length=270, Percent_Identity=26.2962962962963, Blast_Score=86, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI72000259, Length=278, Percent_Identity=28.7769784172662, Blast_Score=83, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17538486, Length=275, Percent_Identity=28.7272727272727, Blast_Score=82, Evalue=2e-16,
Organism=Caenorhabditis elegans, GI17536651, Length=270, Percent_Identity=24.8148148148148, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17544670, Length=276, Percent_Identity=27.1739130434783, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17565030, Length=275, Percent_Identity=26.5454545454545, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17561272, Length=271, Percent_Identity=26.9372693726937, Blast_Score=74, Evalue=8e-14,
Organism=Caenorhabditis elegans, GI17508651, Length=265, Percent_Identity=27.5471698113208, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17563726, Length=278, Percent_Identity=26.2589928057554, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI115534694, Length=259, Percent_Identity=26.6409266409266, Blast_Score=68, Evalue=4e-12,
Organism=Saccharomyces cerevisiae, GI6324126, Length=256, Percent_Identity=21.09375, Blast_Score=64, Evalue=4e-11,
Organism=Drosophila melanogaster, GI28571526, Length=266, Percent_Identity=29.6992481203008, Blast_Score=100, Evalue=9e-22,
Organism=Drosophila melanogaster, GI24644339, Length=268, Percent_Identity=28.7313432835821, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI23397609, Length=268, Percent_Identity=27.6119402985075, Blast_Score=100, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24644337, Length=261, Percent_Identity=32.183908045977, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI21357041, Length=260, Percent_Identity=27.6923076923077, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI21355319, Length=252, Percent_Identity=26.1904761904762, Blast_Score=88, Evalue=5e-18,
Organism=Drosophila melanogaster, GI24639444, Length=259, Percent_Identity=27.7992277992278, Blast_Score=81, Evalue=9e-16,
Organism=Drosophila melanogaster, GI24643142, Length=262, Percent_Identity=27.8625954198473, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI17737361, Length=262, Percent_Identity=26.3358778625954, Blast_Score=69, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28683; Mature: 28552

Theoretical pI: Translated: 4.52; Mature: 4.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFSISGKTAIVTGAANGIGLAIARQFADRGANVMCADIDERRLAEEWGDLSEDSNLRYF
CCEECCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCCCEEE
GGDLRQRLTIANLVSATIDSFDRVDILVNASRQVLETDALDFEDTSVSILLEQNLMTALH
CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCCCCCCCEEEEEHHHHHHHHH
LTQQVAKRMIKQGVDQPEGQCGSIINLSSITARTTRPELMGYSIASAALEQMTRSMALVL
HHHHHHHHHHHCCCCCCCCCCCCEEEECHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEE
APERIRVNAIAFGSVMSASLKTSMSEHSEWRDEIRNQTPLARIAGPAELSDAVQFLAAES
CCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHCC
SSFMTGEVMTVDGGRSLLDAVAVPAH
CCCEECEEEEECCCHHHHHHHCCCCC
>Mature Secondary Structure 
SFSISGKTAIVTGAANGIGLAIARQFADRGANVMCADIDERRLAEEWGDLSEDSNLRYF
CEECCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHCCCCCCCCCEEE
GGDLRQRLTIANLVSATIDSFDRVDILVNASRQVLETDALDFEDTSVSILLEQNLMTALH
CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHCCCCCCCCCEEEEEHHHHHHHHH
LTQQVAKRMIKQGVDQPEGQCGSIINLSSITARTTRPELMGYSIASAALEQMTRSMALVL
HHHHHHHHHHHCCCCCCCCCCCCEEEECHHCCCCCCHHHHHHHHHHHHHHHHHHHHEEEE
APERIRVNAIAFGSVMSASLKTSMSEHSEWRDEIRNQTPLARIAGPAELSDAVQFLAAES
CCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCHHHHHHHHHHHHCC
SSFMTGEVMTVDGGRSLLDAVAVPAH
CCCEECEEEEECCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]