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The map label for this gene is clpS

Identifier: 110678604

GI number: 110678604

Start: 1242515

End: 1242856

Strand: Direct

Name: clpS

Synonym: RD1_1279

Alternate gene names: 110678604

Gene position: 1242515-1242856 (Clockwise)

Preceding gene: 110678602

Following gene: 110678605

Centisome position: 30.06

GC content: 51.17

Gene sequence:

>342_bases
ATGCACCGAGATTTACACATGATGTCTGACCGTTCGGAAGATGATGGGGATACCTCCATCCTGACCGCAACGAAACCGAA
AACGAAGCGCCCGCCGCTTTACAAGGTTTTGTTGTTGAACGATGATTTCACGCCCATGGAGTTTGTGGTGCATGTGCTTG
AGCGTTTCTTTGGTCTCAATCATGCGCAGGCGTTCGAGATCATGCTGACGGTGCATAAAAAAGGCGTCGCGGTCGTGGGT
GTCTTCAGTCACGAAATCGCCGAAACGAAAGTCGCGCAAGTGATGGATTTTGCGCGTCGCCACCAGCATCCGCTGCAGTG
CACAATGGAAAAAGAAGAGTAA

Upstream 100 bases:

>100_bases
GGCGGAATTTTCCACTCGGCCTTGCCCCTTTTCTAAACGCGCAGACAAGTTATATAACCTGTTCAAGGACTCACCACACC
CGCCAATATCAGGAGCAGCA

Downstream 100 bases:

>100_bases
GCAGGTGATCGACGCCCGTCTGGTGCTGGCGCTGAGCGAGGGTGGTCTGGTGCTGCCTGACGCCGGCCAAATCACGGTTG
TTAAGCCGCCGCTTGACGCG

Product: ATP-dependent Clp protease, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MHRDLHMMSDRSEDDGDTSILTATKPKTKRPPLYKVLLLNDDFTPMEFVVHVLERFFGLNHAQAFEIMLTVHKKGVAVVG
VFSHEIAETKVAQVMDFARRHQHPLQCTMEKEE

Sequences:

>Translated_113_residues
MHRDLHMMSDRSEDDGDTSILTATKPKTKRPPLYKVLLLNDDFTPMEFVVHVLERFFGLNHAQAFEIMLTVHKKGVAVVG
VFSHEIAETKVAQVMDFARRHQHPLQCTMEKEE
>Mature_113_residues
MHRDLHMMSDRSEDDGDTSILTATKPKTKRPPLYKVLLLNDDFTPMEFVVHVLERFFGLNHAQAFEIMLTVHKKGVAVVG
VFSHEIAETKVAQVMDFARRHQHPLQCTMEKEE

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=83, Percent_Identity=55.421686746988, Blast_Score=105, Evalue=5e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS_ROSDO (Q16AR8)

Other databases:

- EMBL:   CP000362
- RefSeq:   YP_681611.1
- ProteinModelPortal:   Q16AR8
- SMR:   Q16AR8
- STRING:   Q16AR8
- GeneID:   4197411
- GenomeReviews:   CP000362_GR
- KEGG:   rde:RD1_1279
- NMPDR:   fig|375451.6.peg.1196
- eggNOG:   COG2127
- HOGENOM:   HBG644923
- OMA:   FVIHILE
- PhylomeDB:   Q16AR8
- ProtClustDB:   CLSK2767334
- BioCyc:   RDEN375451:RD1_1279-MONOMER
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 13046; Mature: 13046

Theoretical pI: Translated: 6.72; Mature: 6.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
6.2 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
6.2 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHRDLHMMSDRSEDDGDTSILTATKPKTKRPPLYKVLLLNDDFTPMEFVVHVLERFFGLN
CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCC
HAQAFEIMLTVHKKGVAVVGVFSHEIAETKVAQVMDFARRHQHPLQCTMEKEE
CCHHHHEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC
>Mature Secondary Structure
MHRDLHMMSDRSEDDGDTSILTATKPKTKRPPLYKVLLLNDDFTPMEFVVHVLERFFGLN
CCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHCCC
HAQAFEIMLTVHKKGVAVVGVFSHEIAETKVAQVMDFARRHQHPLQCTMEKEE
CCHHHHEEEEECCCCEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA