| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is rdxI [H]
Identifier: 110678601
GI number: 110678601
Start: 1238116
End: 1240305
Strand: Direct
Name: rdxI [H]
Synonym: RD1_1276
Alternate gene names: 110678601
Gene position: 1238116-1240305 (Clockwise)
Preceding gene: 110678600
Following gene: 110678602
Centisome position: 29.96
GC content: 62.51
Gene sequence:
>2190_bases ATGACGGCAACGGCCACAAATGGCCCTGCGAGCTGCCCCGGTTGTCTTTCGGCACCTGCCGCGCGCGCTGAAGTGCCGTT GCCGGATGCGCAGCTGGCCCTGTCCTTGCCGACAATCCATTGCCAGGCTTGTATTTCAAAGGTTGAAAACAGCCTGACGG CCCATGCTGGTGTGCGTGCGGCGCGCGTCAACCTGACACGCAAACGCGTGATGATTGATGCCGCTCCGGGTGTGACGGCG CAGGAGCTTGCCGATCTGGTCATGGCCGCGGGTTTTGAAGCGCATGAGCTTGATCTGGGCGCGCTCTCGCAGACGCAGAC CGATGCCGCCAGTCGTGATATCCTCATGCGCCTTGCGGTTGCCGGCTTTGCCGCCATGAATGTGATGTTGTTATCGGTCG CGGTCTGGTCGGGGGCCACGGATGCAACGCGGGACATGTTCCATTGGATATCTGCAGCGATCACCCTGCCGGCCCTTGCC TTTTCCGCCCAGCCGTTTTTCCGGAACGCATGGGCGGCGCTGCGGGCGGGGCGGCTCAATATGGATGTGCCGATCACATT GGCCATTGTGCTGGCGGTCGTAACATCCCTTTGGGAAACCGGGCTTTCCGGCAAGCACGCCTATTTTGACGCCGCGCTGA CGCTGGTCTTCTTTTTGCTGGCGGGTCGCTGGTTGGACTCGCGTGCGCGCTCTGCCGCACGCTCTGCCGCCGAAGAACTG ACCGCGCTCGAAGTGCCCCGGGCCTTCCGAATTCAAAACGGTGAAACCAGCGAAATTGCCGTGAGCGCGCTGCGTCTCGG GGATCATGTGCTGGTGCGCCCCGGTGCGCGCGCGCCCGTGGATGGCGTTGTGATTGACGGCACATCCGAGGTCGACCGCT CTGCCCTGACCGGTGAGGCAATGCCGGTCATGCGCACGGTCGGTGACCCGATGAGCACAGGCGAGGTGAACCTGACAGGG CCATTGACACTTGAGGCCACAGCGGTGGGCACGGACACATCCCTGCACCAACTCGCCGCCCTTGTCGCCGTCGCCGAAAG CGGGCGGTCCCGCTACACATCACTGGCGGATCGCGCCGCCAAGCTTTATGCGCCGGGGGTTCATATCCTGTCCGCCCTCG CATTTCTGGGCTGGCTCTTGTGGTCGGGCGACATGCGTGTGTCACTGAATATTGCGGCAGCGGTACTGATTATCACCTGC CCCTGCGCGCTCGGTCTTGCGGTGCCGGCAGTTACAACTGCGGCATCCGGGCGGCTGTTTCGAAAGGGTCTCCTGATCAA GAATGCCACCGCTCTCGAACGTCTGGCAGAGGTGGATACGGTCGTCTTTGACAAAACCGGCACGGTGACGCTGGGCATGC CGCGCGCCACGAATTGGCATGATCTGACGCAGGATCAACAATCGCTGGCCTATGCGCTGGCGCGGGGATCATCACACCCT CTGGCGCAGGCAATCGTGACCGCTGCGCAGGATGATGATACGGCTGAGATCGCGCTTTCAAATCTGACGGAGCAACCGGG ATTTGGCACGCAAGCGCATTATGCGGACAGGCCTGTTCGTCTGGGACGTCCTGAGTGGATCGGGGCGCTGGTTGAAACCG ATGGTTTGTGCACGGCATTGGATACCGGCGAGGGCGCGCCGATCATCCTGCGGTTCGAAGACCGTCCCCGCCCCGGTGCC GCTGATCTGATGGCTGCGCTGAAACGGCAGGGAATGCGGGTAATCTTGCTGTCTGGCGATCGTCAGGCACCTGTTGCCCA AACGGCGGCACATCTGGGAATGCCGGATTTTGCAGCCGAAATGCTGCCCGCTGACAAGGTTGCATTCGTCCAGCGCCTGA CCGATGAGGGCCAACGGGTCTTGATGATCGGCGATGGTTTGAATGATACCGGCGCTTTGGCGGCGGCACATGTGTCAATC AGTCCGGCGCAGGCTCTGGATGCAGCACGCGCTGCCTCTGATATCGTGCTGCTCGGTCAGGATCTGATGCCCGTGGCCGA TGCGGTTGCAACGGCGCGGCTGGCAACCAAGCGCATCCGGGAGAACTTTCAAATCGCAACGGTGTACAACATCGTCGCGG TGCCGCTTGCTGTCGCCGGTCTGGCCACGCCGCTGATCGCGGCCTTGGCGATGTCGACGTCGTCGCTAACGGTATCGGTC AATGCTCTGCGGATCAGGGGGCGCGGATGA
Upstream 100 bases:
>100_bases ATCTGGCGCCGGGAAACTGGAACATCCGCATGTCGGCCACATCCGCTGACGGCCGGGTATTTCGCCAGCGCGTGATCCTG CATGTTCCAAAGGCGCGTTC
Downstream 100 bases:
>100_bases ACGTCCTGGCATATCTGATCCCCATTTCCCTGATACTCGGAGGCCTTGGGCTGGCCGGGTTCTTATATACGTTGCGCAGC CGTCAATACGAAGACCCCGA
Product: RdxI protein
Products: ADP; Orthophosphate. [C]
Alternate protein names: E1-E2 type cation ATPase FixI [H]
Number of amino acids: Translated: 729; Mature: 728
Protein sequence:
>729_residues MTATATNGPASCPGCLSAPAARAEVPLPDAQLALSLPTIHCQACISKVENSLTAHAGVRAARVNLTRKRVMIDAAPGVTA QELADLVMAAGFEAHELDLGALSQTQTDAASRDILMRLAVAGFAAMNVMLLSVAVWSGATDATRDMFHWISAAITLPALA FSAQPFFRNAWAALRAGRLNMDVPITLAIVLAVVTSLWETGLSGKHAYFDAALTLVFFLLAGRWLDSRARSAARSAAEEL TALEVPRAFRIQNGETSEIAVSALRLGDHVLVRPGARAPVDGVVIDGTSEVDRSALTGEAMPVMRTVGDPMSTGEVNLTG PLTLEATAVGTDTSLHQLAALVAVAESGRSRYTSLADRAAKLYAPGVHILSALAFLGWLLWSGDMRVSLNIAAAVLIITC PCALGLAVPAVTTAASGRLFRKGLLIKNATALERLAEVDTVVFDKTGTVTLGMPRATNWHDLTQDQQSLAYALARGSSHP LAQAIVTAAQDDDTAEIALSNLTEQPGFGTQAHYADRPVRLGRPEWIGALVETDGLCTALDTGEGAPIILRFEDRPRPGA ADLMAALKRQGMRVILLSGDRQAPVAQTAAHLGMPDFAAEMLPADKVAFVQRLTDEGQRVLMIGDGLNDTGALAAAHVSI SPAQALDAARAASDIVLLGQDLMPVADAVATARLATKRIRENFQIATVYNIVAVPLAVAGLATPLIAALAMSTSSLTVSV NALRIRGRG
Sequences:
>Translated_729_residues MTATATNGPASCPGCLSAPAARAEVPLPDAQLALSLPTIHCQACISKVENSLTAHAGVRAARVNLTRKRVMIDAAPGVTA QELADLVMAAGFEAHELDLGALSQTQTDAASRDILMRLAVAGFAAMNVMLLSVAVWSGATDATRDMFHWISAAITLPALA FSAQPFFRNAWAALRAGRLNMDVPITLAIVLAVVTSLWETGLSGKHAYFDAALTLVFFLLAGRWLDSRARSAARSAAEEL TALEVPRAFRIQNGETSEIAVSALRLGDHVLVRPGARAPVDGVVIDGTSEVDRSALTGEAMPVMRTVGDPMSTGEVNLTG PLTLEATAVGTDTSLHQLAALVAVAESGRSRYTSLADRAAKLYAPGVHILSALAFLGWLLWSGDMRVSLNIAAAVLIITC PCALGLAVPAVTTAASGRLFRKGLLIKNATALERLAEVDTVVFDKTGTVTLGMPRATNWHDLTQDQQSLAYALARGSSHP LAQAIVTAAQDDDTAEIALSNLTEQPGFGTQAHYADRPVRLGRPEWIGALVETDGLCTALDTGEGAPIILRFEDRPRPGA ADLMAALKRQGMRVILLSGDRQAPVAQTAAHLGMPDFAAEMLPADKVAFVQRLTDEGQRVLMIGDGLNDTGALAAAHVSI SPAQALDAARAASDIVLLGQDLMPVADAVATARLATKRIRENFQIATVYNIVAVPLAVAGLATPLIAALAMSTSSLTVSV NALRIRGRG >Mature_728_residues TATATNGPASCPGCLSAPAARAEVPLPDAQLALSLPTIHCQACISKVENSLTAHAGVRAARVNLTRKRVMIDAAPGVTAQ ELADLVMAAGFEAHELDLGALSQTQTDAASRDILMRLAVAGFAAMNVMLLSVAVWSGATDATRDMFHWISAAITLPALAF SAQPFFRNAWAALRAGRLNMDVPITLAIVLAVVTSLWETGLSGKHAYFDAALTLVFFLLAGRWLDSRARSAARSAAEELT ALEVPRAFRIQNGETSEIAVSALRLGDHVLVRPGARAPVDGVVIDGTSEVDRSALTGEAMPVMRTVGDPMSTGEVNLTGP LTLEATAVGTDTSLHQLAALVAVAESGRSRYTSLADRAAKLYAPGVHILSALAFLGWLLWSGDMRVSLNIAAAVLIITCP CALGLAVPAVTTAASGRLFRKGLLIKNATALERLAEVDTVVFDKTGTVTLGMPRATNWHDLTQDQQSLAYALARGSSHPL AQAIVTAAQDDDTAEIALSNLTEQPGFGTQAHYADRPVRLGRPEWIGALVETDGLCTALDTGEGAPIILRFEDRPRPGAA DLMAALKRQGMRVILLSGDRQAPVAQTAAHLGMPDFAAEMLPADKVAFVQRLTDEGQRVLMIGDGLNDTGALAAAHVSIS PAQALDAARAASDIVLLGQDLMPVADAVATARLATKRIRENFQIATVYNIVAVPLAVAGLATPLIAALAMSTSSLTVSVN ALRIRGRG
Specific function: FixI is a pump of a specific cation involved in symbiotic nitrogen fixation. The four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalyzed by FixG [H]
COG id: COG2217
COG function: function code P; Cation transport ATPase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HMA domain [H]
Homologues:
Organism=Homo sapiens, GI55743071, Length=793, Percent_Identity=27.3644388398487, Blast_Score=267, Evalue=2e-71, Organism=Homo sapiens, GI115529486, Length=825, Percent_Identity=27.6363636363636, Blast_Score=264, Evalue=2e-70, Organism=Homo sapiens, GI55743073, Length=542, Percent_Identity=28.9667896678967, Blast_Score=199, Evalue=7e-51, Organism=Homo sapiens, GI153946397, Length=257, Percent_Identity=28.7937743190661, Blast_Score=74, Evalue=6e-13, Organism=Homo sapiens, GI237681111, Length=255, Percent_Identity=29.8039215686275, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI237681109, Length=255, Percent_Identity=29.8039215686275, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI21361181, Length=255, Percent_Identity=29.8039215686275, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI22748667, Length=303, Percent_Identity=25.7425742574257, Blast_Score=72, Evalue=2e-12, Organism=Homo sapiens, GI4502271, Length=234, Percent_Identity=28.2051282051282, Blast_Score=71, Evalue=3e-12, Organism=Escherichia coli, GI1786691, Length=747, Percent_Identity=30.5220883534137, Blast_Score=271, Evalue=9e-74, Organism=Escherichia coli, GI1789879, Length=754, Percent_Identity=28.7798408488064, Blast_Score=218, Evalue=1e-57, Organism=Escherichia coli, GI1786914, Length=460, Percent_Identity=28.695652173913, Blast_Score=127, Evalue=3e-30, Organism=Caenorhabditis elegans, GI17556548, Length=487, Percent_Identity=27.7207392197125, Blast_Score=168, Evalue=7e-42, Organism=Saccharomyces cerevisiae, GI6320475, Length=640, Percent_Identity=26.5625, Blast_Score=220, Evalue=5e-58, Organism=Saccharomyces cerevisiae, GI6319772, Length=601, Percent_Identity=27.7870216306156, Blast_Score=210, Evalue=7e-55, Organism=Saccharomyces cerevisiae, GI6321430, Length=227, Percent_Identity=27.7533039647577, Blast_Score=69, Evalue=2e-12, Organism=Saccharomyces cerevisiae, GI6325221, Length=226, Percent_Identity=26.5486725663717, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI221329854, Length=549, Percent_Identity=29.3260473588342, Blast_Score=190, Evalue=4e-48, Organism=Drosophila melanogaster, GI281366676, Length=227, Percent_Identity=29.0748898678414, Blast_Score=67, Evalue=5e-11, Organism=Drosophila melanogaster, GI24648576, Length=247, Percent_Identity=28.3400809716599, Blast_Score=67, Evalue=5e-11, Organism=Drosophila melanogaster, GI45553437, Length=247, Percent_Identity=28.3400809716599, Blast_Score=67, Evalue=6e-11, Organism=Drosophila melanogaster, GI45553435, Length=247, Percent_Identity=28.3400809716599, Blast_Score=67, Evalue=6e-11, Organism=Drosophila melanogaster, GI45553439, Length=247, Percent_Identity=28.3400809716599, Blast_Score=67, Evalue=6e-11, Organism=Drosophila melanogaster, GI45553441, Length=247, Percent_Identity=28.3400809716599, Blast_Score=67, Evalue=6e-11, Organism=Drosophila melanogaster, GI24648580, Length=247, Percent_Identity=28.3400809716599, Blast_Score=67, Evalue=6e-11, Organism=Drosophila melanogaster, GI24648578, Length=247, Percent_Identity=28.3400809716599, Blast_Score=67, Evalue=6e-11, Organism=Drosophila melanogaster, GI281362164, Length=247, Percent_Identity=28.3400809716599, Blast_Score=66, Evalue=7e-11, Organism=Drosophila melanogaster, GI24648582, Length=247, Percent_Identity=28.3400809716599, Blast_Score=66, Evalue=8e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008250 - InterPro: IPR006403 - InterPro: IPR000695 - InterPro: IPR006416 - InterPro: IPR001757 - InterPro: IPR018303 - InterPro: IPR005834 - InterPro: IPR023214 - InterPro: IPR017969 - InterPro: IPR006121 - InterPro: IPR000150 [H]
Pfam domain/function: PF00122 E1-E2_ATPase; PF00702 Hydrolase [H]
EC number: 3.6.3.4 [C]
Molecular weight: Translated: 76289; Mature: 76157
Theoretical pI: Translated: 6.21; Mature: 6.21
Prosite motif: PS00154 ATPASE_E1_E2 ; PS01047 HMA_1 ; PS50846 HMA_2 ; PS01229 COF_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTATATNGPASCPGCLSAPAARAEVPLPDAQLALSLPTIHCQACISKVENSLTAHAGVRA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCH ARVNLTRKRVMIDAAPGVTAQELADLVMAAGFEAHELDLGALSQTQTDAASRDILMRLAV HEEEEEEEEEEEECCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHH AGFAAMNVMLLSVAVWSGATDATRDMFHWISAAITLPALAFSAQPFFRNAWAALRAGRLN HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC MDVPITLAIVLAVVTSLWETGLSGKHAYFDAALTLVFFLLAGRWLDSRARSAARSAAEEL CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH TALEVPRAFRIQNGETSEIAVSALRLGDHVLVRPGARAPVDGVVIDGTSEVDRSALTGEA HHHCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEECCCCHHHHHHHCCCC MPVMRTVGDPMSTGEVNLTGPLTLEATAVGTDTSLHQLAALVAVAESGRSRYTSLADRAA HHHHHHCCCCCCCCEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH KLYAPGVHILSALAFLGWLLWSGDMRVSLNIAAAVLIITCPCALGLAVPAVTTAASGRLF HHHCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH RKGLLIKNATALERLAEVDTVVFDKTGTVTLGMPRATNWHDLTQDQQSLAYALARGSSHP HHCCCCCCHHHHHHHHHHHHEEECCCCCEEECCCCCCCCHHHCHHHHHHHHHHHCCCCCH LAQAIVTAAQDDDTAEIALSNLTEQPGFGTQAHYADRPVRLGRPEWIGALVETDGLCTAL HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEE DTGEGAPIILRFEDRPRPGAADLMAALKRQGMRVILLSGDRQAPVAQTAAHLGMPDFAAE ECCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCHHHHH MLPADKVAFVQRLTDEGQRVLMIGDGLNDTGALAAAHVSISPAQALDAARAASDIVLLGQ HCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHCCEEEECC DLMPVADAVATARLATKRIRENFQIATVYNIVAVPLAVAGLATPLIAALAMSTSSLTVSV CHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE NALRIRGRG EEEEEECCC >Mature Secondary Structure TATATNGPASCPGCLSAPAARAEVPLPDAQLALSLPTIHCQACISKVENSLTAHAGVRA CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCH ARVNLTRKRVMIDAAPGVTAQELADLVMAAGFEAHELDLGALSQTQTDAASRDILMRLAV HEEEEEEEEEEEECCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHH AGFAAMNVMLLSVAVWSGATDATRDMFHWISAAITLPALAFSAQPFFRNAWAALRAGRLN HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCC MDVPITLAIVLAVVTSLWETGLSGKHAYFDAALTLVFFLLAGRWLDSRARSAARSAAEEL CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH TALEVPRAFRIQNGETSEIAVSALRLGDHVLVRPGARAPVDGVVIDGTSEVDRSALTGEA HHHCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEECCCCHHHHHHHCCCC MPVMRTVGDPMSTGEVNLTGPLTLEATAVGTDTSLHQLAALVAVAESGRSRYTSLADRAA HHHHHHCCCCCCCCEEEECCCEEEEEEECCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHH KLYAPGVHILSALAFLGWLLWSGDMRVSLNIAAAVLIITCPCALGLAVPAVTTAASGRLF HHHCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH RKGLLIKNATALERLAEVDTVVFDKTGTVTLGMPRATNWHDLTQDQQSLAYALARGSSHP HHCCCCCCHHHHHHHHHHHHEEECCCCCEEECCCCCCCCHHHCHHHHHHHHHHHCCCCCH LAQAIVTAAQDDDTAEIALSNLTEQPGFGTQAHYADRPVRLGRPEWIGALVETDGLCTAL HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEE DTGEGAPIILRFEDRPRPGAADLMAALKRQGMRVILLSGDRQAPVAQTAAHLGMPDFAAE ECCCCCEEEEEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCCHHHHH MLPADKVAFVQRLTDEGQRVLMIGDGLNDTGALAAAHVSISPAQALDAARAASDIVLLGQ HCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHCCEEEECC DLMPVADAVATARLATKRIRENFQIATVYNIVAVPLAVAGLATPLIAALAMSTSSLTVSV CHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE NALRIRGRG EEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: Cu [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; H2O [C]
Specific reaction: ATP + H2O = ADP + Orthophosphate. [C]
General reaction: Phosphorous acid anhydride hydrolysis [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2536685; 11481432 [H]