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The map label for this gene is ccoO

Identifier: 110678596

GI number: 110678596

Start: 1234328

End: 1235053

Strand: Direct

Name: ccoO

Synonym: RD1_1271

Alternate gene names: NA

Gene position: 1234328-1235053 (Clockwise)

Preceding gene: 110678595

Following gene: 110678597

Centisome position: 29.86

GC content: 57.99

Gene sequence:

>726_bases
ATGTCGATCCTCGCAAAACACAAGTTCATTGAAACCAATGCAACACTGTTGCTGGTGCTGAGCTTCCTTGTGGTTACAAT
CGGGGGGCTGGTGCAGATCACCCCCCTGTTCTACCTCGAAAACACCATCGAAAAGGTTGAAGGCATGCGGCCCTATTCGC
CGCTGGAACTGACGGGCCGTGACATCTACATCCGCGAAGGGTGCTATGTCTGCCACAGCCAGATGATCCGCCCGATGCGC
GACGAAGTCGAGCGCTACGGGCATTATTCGCTGGCGGCGGAATCCATGTACGACCATCCGTTCCAATGGGGTTCCAAGCG
GACCGGGCCGGATCTGGCGCGTGTTGGCGGTCGCTATTCGGATGACTGGCACATTGATCACCTGCGCGACCCACAGTCGG
TTGTGCCTGAATCGATCATGCCGAAGTATGGCTTTCTCGAAGAGACGCTGATCGAGCCGGATTATGTGGCCGAACTGATG
TCGACACATAGGTTCGTGGGCGTGCCTTATACCGATGAGATGATCGCGGCGGCAAATGCGGATTTCCGCGCGCAGGCCGA
TCCGGACAGCGACTATGACGAAATGCTGGAACGCTACCCGGGGGCGCAGGTGCGCAACTTTGACGGGGCGCCCGGTATCT
CCGAGGCCGATGCGCTGATCGCCTATTTACAAATGCTGGGCACGCTGGTCGATTTCTCGACCTTCACCCCAGATGCAAGC
CGCTAG

Upstream 100 bases:

>100_bases
CACTGATCATGTGTTACAACCTTTGGATGACTGTGAAGGCTGCGCCCGCCAAGGCGCCGCTCGGCACAGCTGTCCCTGCT
GAATAAGGAGGGATCAATAC

Downstream 100 bases:

>100_bases
GGAGGGGAAAAGATGGAAACCTATTCTTTCCTGCGTGAATTCGCCGATAGCTGGATGCTCTTGTTATTGTTTTGCATTTT
CGTTGGCATCTGGTTCTGGG

Product: cbb3-type cytochrome c oxidase subunit II

Products: ferricytochrome c; H2O

Alternate protein names: Cbb3-Type Cytochrome C Oxidase Subunit II; Cytochrome C Oxidase Mono-Heme Subunit/FixO; Cytochrome C Oxidase Cbb3-Type Subunit I; Cb-Type Cytochrome C Oxidase Subunit II; Cbb3-Type Cytochrome Oxidase Cytochrome C Subunit; Bifunctional Cbb3-Type Cytochrome C Oxidase Subunit I/II; Cytochrome C Oxidase; Cytochrome C Oxidase Subunit CcoO; Cytochrome Oxidase Subunit; Cytochrome C Oxidase Subunit; Cytochrome-C Oxidase FixO Chain; Cytochrome-C Oxidase Subunit II; Bifunctional Cytochrome C Oxidase Subunit SccoN/O; Cytochrome-Cbb3 Oxidase Subunit I; Transmembrane Cytochrome C Oxidase FixO Protein; Cbb3-Type Cytochrome Oxidase; Cbb3-Type Cytochrome C Oxidase Subunit CcoO; Cbb3-Type Cytochrome C Oxidase Subunit I + II; Cytochrome Oxidase; Cytochrome C Oxidase Mono-Heme Subunit; Cytochrome C Oxidase Cbb3-Type; Cytochrome C Oxidase Cbb3-Type Mono-Heme Subunit II; Cytochrome Cbb3 Oxidase Subunit I/III; Cytochrome Oxidase Cytochrome C Subunit; Cytochrome C Oxidase Subunit CcoN; Cytochrome C Oxidase Cbb3-Type Subunit I/Mono-Heme Subunit; Cytochrome C Oxidase FixO Chain; Cytochrome C Oxidase Mono-Heme Subunit/FixO Superfamily; Cytochrome-Cbb3 Oxidase Subunit II; Cytochrome C Family Protein; Cytochrome C Oxidase CcoO Subunit; Cytochrome Cbb3 Oxidase Diheme Subunit; Cbb3-Type Cytochrome C Oxidase Subunits CcoN/CcoO; Cytochrome C Oxidase Cbb3-Type Subunit I And II

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MSILAKHKFIETNATLLLVLSFLVVTIGGLVQITPLFYLENTIEKVEGMRPYSPLELTGRDIYIREGCYVCHSQMIRPMR
DEVERYGHYSLAAESMYDHPFQWGSKRTGPDLARVGGRYSDDWHIDHLRDPQSVVPESIMPKYGFLEETLIEPDYVAELM
STHRFVGVPYTDEMIAAANADFRAQADPDSDYDEMLERYPGAQVRNFDGAPGISEADALIAYLQMLGTLVDFSTFTPDAS
R

Sequences:

>Translated_241_residues
MSILAKHKFIETNATLLLVLSFLVVTIGGLVQITPLFYLENTIEKVEGMRPYSPLELTGRDIYIREGCYVCHSQMIRPMR
DEVERYGHYSLAAESMYDHPFQWGSKRTGPDLARVGGRYSDDWHIDHLRDPQSVVPESIMPKYGFLEETLIEPDYVAELM
STHRFVGVPYTDEMIAAANADFRAQADPDSDYDEMLERYPGAQVRNFDGAPGISEADALIAYLQMLGTLVDFSTFTPDAS
R
>Mature_240_residues
SILAKHKFIETNATLLLVLSFLVVTIGGLVQITPLFYLENTIEKVEGMRPYSPLELTGRDIYIREGCYVCHSQMIRPMRD
EVERYGHYSLAAESMYDHPFQWGSKRTGPDLARVGGRYSDDWHIDHLRDPQSVVPESIMPKYGFLEETLIEPDYVAELMS
THRFVGVPYTDEMIAAANADFRAQADPDSDYDEMLERYPGAQVRNFDGAPGISEADALIAYLQMLGTLVDFSTFTPDASR

Specific function: Unknown

COG id: COG2993

COG function: function code C; Cbb3-type cytochrome oxidase, cytochrome c subunit

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 1.9.3.1

Molecular weight: Translated: 27303; Mature: 27172

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSILAKHKFIETNATLLLVLSFLVVTIGGLVQITPLFYLENTIEKVEGMRPYSPLELTGR
CCCCHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCC
DIYIREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYDHPFQWGSKRTGPDLARVGGRYS
EEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCC
DDWHIDHLRDPQSVVPESIMPKYGFLEETLIEPDYVAELMSTHRFVGVPYTDEMIAAANA
CCCCCCCCCCCHHHCCHHHCCCCCCHHHHHCCHHHHHHHHHHHCEECCCCCHHHHHHCCC
DFRAQADPDSDYDEMLERYPGAQVRNFDGAPGISEADALIAYLQMLGTLVDFSTFTPDAS
CCCCCCCCCCCHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
R
C
>Mature Secondary Structure 
SILAKHKFIETNATLLLVLSFLVVTIGGLVQITPLFYLENTIEKVEGMRPYSPLELTGR
CCCHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECCC
DIYIREGCYVCHSQMIRPMRDEVERYGHYSLAAESMYDHPFQWGSKRTGPDLARVGGRYS
EEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCC
DDWHIDHLRDPQSVVPESIMPKYGFLEETLIEPDYVAELMSTHRFVGVPYTDEMIAAANA
CCCCCCCCCCCHHHCCHHHCCCCCCHHHHHCCHHHHHHHHHHHCEECCCCCHHHHHHCCC
DFRAQADPDSDYDEMLERYPGAQVRNFDGAPGISEADALIAYLQMLGTLVDFSTFTPDAS
CCCCCCCCCCCHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ferrocytochrome c; O2

Specific reaction: 4 ferrocytochrome c + O2 = 4 ferricytochrome c + 2 H2O

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA