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The map label for this gene is 110678541

Identifier: 110678541

GI number: 110678541

Start: 1177466

End: 1178992

Strand: Direct

Name: 110678541

Synonym: RD1_1213

Alternate gene names: NA

Gene position: 1177466-1178992 (Clockwise)

Preceding gene: 110678540

Following gene: 110678543

Centisome position: 28.49

GC content: 57.96

Gene sequence:

>1527_bases
GTGAGCCGCCTCGTTCTGGTGCTGGGGGACCAGCTGTCCGAAAGCCTCAGCGCGTTGCAGGCGGGCGACAAGTCGCACGA
TACTGTTGTGATGGCCGAGGTCGCAGATGAAACCTCCTATGTGCAGCACCACCCGAAAAAGATCGCATTGATCTTTGCGG
CCATGCGGAAATTCGCGCAACACCTTCGAAATGAGGGTTGGAACGTTGCCTATGCGCAGCTGGATGACAGCGAAAACGCC
GGGTCCATTGTTGGTGAGCTGTTGCGCCGGGCAGAGCAGACCGGGGCGCAAACCGTATTGGCCACAGAGCCGGGGGAGTG
GCGTCTCATCACGCTTCTCAAAGAGGCGCCGTTGCGGGTCGAGGTGCTGCCGGATGATCGTTTTCTTGCGTCTCATCAGG
AGTTCGAAGACTGGGCCGACGGGCGCAAGCAGTTGCGGATGGAGTATTTCTATCGCGAGATGCGGCGCAAGACGGGTCTG
CTGATGGAGGGCGATCAACCCAGCGGCGGCAAGTGGAATTTTGATCACGACAACCGCAAACCGGCACCAGATGAGATTAC
ATTTGACGGGCCACTGCGGTTCGAGCCGGATGACACCGTGCAAGAGGTTCTTGACCTTGTGGAGGCGCGCTTTTCAAATC
ACTTTGGCAGGCTGCGTCCCTTCTGGTTTGCGACTTCCCGCGCCGAAGCGCTGCAACAGTTGGATCATTTCATCGAAAAC
GGCCTGCCTAAATTTGGCGATTTTCAGGACGCGATGCTGAACGACAACCGGTTCTTGTATCACGGTCTGATCTCAACTTC
GCTGAACATCGGATTGTTGACCCCGCTTGAGGTCTGCACCGCCGCCGCGCGTGCCTATGAACAGGGCGATGCCCCCATCA
ACGCGGTGGAAGGCTTCATCCGGCAGATCATCGGATGGCGCGAATATGTGCGCGGCATCTATTTTCTGGAAGGGCCCGAT
TACACAGGCCGCAACGTTCTGGGGCAGAGCCGCGATTTACCGGATGTCTATTGGGGCGGCAAAACGGACATGAACTGCAT
GGCCAAAGCTGTGGGCCAGACCCGCGAAGAGGCCTATGCCCATCACATCCAACGCTTGATGATCACCGGGAATTTCGGCT
TGCTGGCCGGGGTCGACCCGCAGCAGATGCATGAATGGTATCTGGCCGTATACGCGGACGCATTCGAATGGGTCGAAGCG
CCCAACACTGTCGGTATGAGCCAGTTTGCCGACGGGGGTATCATCGCCTCCAAACCCTATGTCAGCAGCGGTGCCTATAT
CAATCGCATGTCGGATTACTGCAAATCCTGCAGTTATAAAGTGGCACAGAAAACCGGCGACACGGCCTGCCCGTTCAACC
TGCTTTATTGGCATTTTCTGGACCGTCACCGCGCGCGTTTTTCCAATAACGCGCGGATGGGCAACATGTATCGTACATGG
GACCGGATGGATGCCGAAAGACGCGAGACGGTGATTGCGCAGGCGGATGCGCTGTTGGCGCGCCTCGACGCGGGCGAGGC
CATCTGA

Upstream 100 bases:

>100_bases
CAGCGTCCGAGGCGGCGCATAACCTGTTGCGCGTCGTCGATGGCTTGTCTGCGGCGCAGACGGGCCGGTTTTTCGACTGG
GCAGGCAAGGAGGTTGCGTG

Downstream 100 bases:

>100_bases
CCGCGATGTTCTACCCGCCGTCTTTCAGGATGCCGTTTTCCCATTCGCCGGAGTTTTCCTCGCCCGTTGCATAGCGCATG
GTGCCGGTCCCTTGCCGTTT

Product: hypothetical protein

Products: NA

Alternate protein names: Deoxyribodipyrimidine Photolyase-Like Protein; Photolyase; Deoxyribodipyrimidine Photolyase Family Protein; Deoxyribodipyrimidine Photolyase; Photolyase Protein Family Protein; Deoxyribodipyrimidine Photolyase-Like Protein Protein; Photolyase Family Protein; Cryptochrome/Photolyase; DNA Photolyase; Bcct Transporter; Protein Related Deoxyribodipyrimidine Photolyase; Deoxyribodipyrimidine Photo-Lyase; Cryptochrome/Photolyase-Related; Photolyase Related Protein; BCCT Transporter; Alpha-Deoxyribodipyrimidine Photolyase-Related Protein; Deoxyribodipyrimidine Photolyase Related Protein; A Deoxyribodipyrimidine Photolyase-Like Protein; Deoxyribodipyrimidine Photolyase Homolog

Number of amino acids: Translated: 508; Mature: 507

Protein sequence:

>508_residues
MSRLVLVLGDQLSESLSALQAGDKSHDTVVMAEVADETSYVQHHPKKIALIFAAMRKFAQHLRNEGWNVAYAQLDDSENA
GSIVGELLRRAEQTGAQTVLATEPGEWRLITLLKEAPLRVEVLPDDRFLASHQEFEDWADGRKQLRMEYFYREMRRKTGL
LMEGDQPSGGKWNFDHDNRKPAPDEITFDGPLRFEPDDTVQEVLDLVEARFSNHFGRLRPFWFATSRAEALQQLDHFIEN
GLPKFGDFQDAMLNDNRFLYHGLISTSLNIGLLTPLEVCTAAARAYEQGDAPINAVEGFIRQIIGWREYVRGIYFLEGPD
YTGRNVLGQSRDLPDVYWGGKTDMNCMAKAVGQTREEAYAHHIQRLMITGNFGLLAGVDPQQMHEWYLAVYADAFEWVEA
PNTVGMSQFADGGIIASKPYVSSGAYINRMSDYCKSCSYKVAQKTGDTACPFNLLYWHFLDRHRARFSNNARMGNMYRTW
DRMDAERRETVIAQADALLARLDAGEAI

Sequences:

>Translated_508_residues
MSRLVLVLGDQLSESLSALQAGDKSHDTVVMAEVADETSYVQHHPKKIALIFAAMRKFAQHLRNEGWNVAYAQLDDSENA
GSIVGELLRRAEQTGAQTVLATEPGEWRLITLLKEAPLRVEVLPDDRFLASHQEFEDWADGRKQLRMEYFYREMRRKTGL
LMEGDQPSGGKWNFDHDNRKPAPDEITFDGPLRFEPDDTVQEVLDLVEARFSNHFGRLRPFWFATSRAEALQQLDHFIEN
GLPKFGDFQDAMLNDNRFLYHGLISTSLNIGLLTPLEVCTAAARAYEQGDAPINAVEGFIRQIIGWREYVRGIYFLEGPD
YTGRNVLGQSRDLPDVYWGGKTDMNCMAKAVGQTREEAYAHHIQRLMITGNFGLLAGVDPQQMHEWYLAVYADAFEWVEA
PNTVGMSQFADGGIIASKPYVSSGAYINRMSDYCKSCSYKVAQKTGDTACPFNLLYWHFLDRHRARFSNNARMGNMYRTW
DRMDAERRETVIAQADALLARLDAGEAI
>Mature_507_residues
SRLVLVLGDQLSESLSALQAGDKSHDTVVMAEVADETSYVQHHPKKIALIFAAMRKFAQHLRNEGWNVAYAQLDDSENAG
SIVGELLRRAEQTGAQTVLATEPGEWRLITLLKEAPLRVEVLPDDRFLASHQEFEDWADGRKQLRMEYFYREMRRKTGLL
MEGDQPSGGKWNFDHDNRKPAPDEITFDGPLRFEPDDTVQEVLDLVEARFSNHFGRLRPFWFATSRAEALQQLDHFIENG
LPKFGDFQDAMLNDNRFLYHGLISTSLNIGLLTPLEVCTAAARAYEQGDAPINAVEGFIRQIIGWREYVRGIYFLEGPDY
TGRNVLGQSRDLPDVYWGGKTDMNCMAKAVGQTREEAYAHHIQRLMITGNFGLLAGVDPQQMHEWYLAVYADAFEWVEAP
NTVGMSQFADGGIIASKPYVSSGAYINRMSDYCKSCSYKVAQKTGDTACPFNLLYWHFLDRHRARFSNNARMGNMYRTWD
RMDAERRETVIAQADALLARLDAGEAI

Specific function: Unknown

COG id: COG3046

COG function: function code R; Uncharacterized protein related to deoxyribodipyrimidine photolyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 57663; Mature: 57531

Theoretical pI: Translated: 5.17; Mature: 5.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRLVLVLGDQLSESLSALQAGDKSHDTVVMAEVADETSYVQHHPKKIALIFAAMRKFAQ
CCCEEEEECHHHHHHHHHHHCCCCCCCEEEEEEHHCHHHHHHHCCHHHHHHHHHHHHHHH
HLRNEGWNVAYAQLDDSENAGSIVGELLRRAEQTGAQTVLATEPGEWRLITLLKEAPLRV
HHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCCCEE
EVLPDDRFLASHQEFEDWADGRKQLRMEYFYREMRRKTGLLMEGDQPSGGKWNFDHDNRK
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCC
PAPDEITFDGPLRFEPDDTVQEVLDLVEARFSNHFGRLRPFWFATSRAEALQQLDHFIEN
CCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHC
GLPKFGDFQDAMLNDNRFLYHGLISTSLNIGLLTPLEVCTAAARAYEQGDAPINAVEGFI
CCCCCCCCHHHHHCCCCEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
RQIIGWREYVRGIYFLEGPDYTGRNVLGQSRDLPDVYWGGKTDMNCMAKAVGQTREEAYA
HHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
HHIQRLMITGNFGLLAGVDPQQMHEWYLAVYADAFEWVEAPNTVGMSQFADGGIIASKPY
HHHHHHHEECCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEEECCCC
VSSGAYINRMSDYCKSCSYKVAQKTGDTACPFNLLYWHFLDRHRARFSNNARMGNMYRTW
CCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
DRMDAERRETVIAQADALLARLDAGEAI
HHCCHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
SRLVLVLGDQLSESLSALQAGDKSHDTVVMAEVADETSYVQHHPKKIALIFAAMRKFAQ
CCEEEEECHHHHHHHHHHHCCCCCCCEEEEEEHHCHHHHHHHCCHHHHHHHHHHHHHHH
HLRNEGWNVAYAQLDDSENAGSIVGELLRRAEQTGAQTVLATEPGEWRLITLLKEAPLRV
HHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEECCCCCEE
EVLPDDRFLASHQEFEDWADGRKQLRMEYFYREMRRKTGLLMEGDQPSGGKWNFDHDNRK
EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCC
PAPDEITFDGPLRFEPDDTVQEVLDLVEARFSNHFGRLRPFWFATSRAEALQQLDHFIEN
CCCCCEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHHHHHC
GLPKFGDFQDAMLNDNRFLYHGLISTSLNIGLLTPLEVCTAAARAYEQGDAPINAVEGFI
CCCCCCCCHHHHHCCCCEEEEEHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHH
RQIIGWREYVRGIYFLEGPDYTGRNVLGQSRDLPDVYWGGKTDMNCMAKAVGQTREEAYA
HHHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
HHIQRLMITGNFGLLAGVDPQQMHEWYLAVYADAFEWVEAPNTVGMSQFADGGIIASKPY
HHHHHHHEECCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCCEEECCCC
VSSGAYINRMSDYCKSCSYKVAQKTGDTACPFNLLYWHFLDRHRARFSNNARMGNMYRTW
CCCCHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHH
DRMDAERRETVIAQADALLARLDAGEAI
HHCCHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA