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The map label for this gene is csgA [H]

Identifier: 110678540

GI number: 110678540

Start: 1176804

End: 1177469

Strand: Direct

Name: csgA [H]

Synonym: RD1_1212

Alternate gene names: 110678540

Gene position: 1176804-1177469 (Clockwise)

Preceding gene: 110678531

Following gene: 110678541

Centisome position: 28.47

GC content: 62.61

Gene sequence:

>666_bases
ATGAAAAATGTTTTGATACTTGGGGCGTCCGGCGGGATCGGTGCGGCGCTCACAGCCGCCTGCAAAGCGCGCGGCGACGT
GGTTACGGGGCTGTCGCGCAGCGGTGATGGTTTTGATATAACGGATGACGCTTCAGTCGCGCAGCATCTGGCCTCGCTCA
GCGCGCCGTTTGATCTGATCATCGTGGCAACAGGGGCCTTGGAAATAAATGGCGCAGTCCCGGAGAAGTCGATCCGGAAC
GTCACTGCGCAGGCGATGCTGGATCAATTTGAACTCAATGCGGTCGGGCCTGCGCTGGTGCTGAGCCATGCTGCGCGGTT
ACTGCCCCGCGACCGCCCGTCGGTTTTTGCCGTGCTCTCCGCGCGGGTCGGTTCCATCGGTGACAACAAGATAGGCGGAT
GGATCAGCTATCGCAGCGCGAAGGCGGCGGTCAATCAGGTGGTGCGCACGGCGTCCATCGAATTGGCACGCACGCATCCG
CAGTCCGTTTGTGTGGCCCTGCATCCCGGCACGGTCCAGACGGCCTTTACCGAGAAATACCTCGGCCGGCATCCGTCGGT
GCCAGCGTCCGAGGCGGCGCATAACCTGTTGCGCGTCGTCGATGGCTTGTCTGCGGCGCAGACGGGCCGGTTTTTCGACT
GGGCAGGCAAGGAGGTTGCGTGGTGA

Upstream 100 bases:

>100_bases
GGTCGGATTTATACAGCAGCTTGGCAAAATGGAAAGAGGCTTTGTCCTGTTTGCCTGCGCCGGGGTTGAAGGCGCGCTTG
CGCCTTCTAGGTCGCTGAGA

Downstream 100 bases:

>100_bases
GCCGCCTCGTTCTGGTGCTGGGGGACCAGCTGTCCGAAAGCCTCAGCGCGTTGCAGGCGGGCGACAAGTCGCACGATACT
GTTGTGATGGCCGAGGTCGC

Product: C factor, cell signaling protein, putative

Products: NA

Alternate protein names: C signal [H]

Number of amino acids: Translated: 221; Mature: 221

Protein sequence:

>221_residues
MKNVLILGASGGIGAALTAACKARGDVVTGLSRSGDGFDITDDASVAQHLASLSAPFDLIIVATGALEINGAVPEKSIRN
VTAQAMLDQFELNAVGPALVLSHAARLLPRDRPSVFAVLSARVGSIGDNKIGGWISYRSAKAAVNQVVRTASIELARTHP
QSVCVALHPGTVQTAFTEKYLGRHPSVPASEAAHNLLRVVDGLSAAQTGRFFDWAGKEVAW

Sequences:

>Translated_221_residues
MKNVLILGASGGIGAALTAACKARGDVVTGLSRSGDGFDITDDASVAQHLASLSAPFDLIIVATGALEINGAVPEKSIRN
VTAQAMLDQFELNAVGPALVLSHAARLLPRDRPSVFAVLSARVGSIGDNKIGGWISYRSAKAAVNQVVRTASIELARTHP
QSVCVALHPGTVQTAFTEKYLGRHPSVPASEAAHNLLRVVDGLSAAQTGRFFDWAGKEVAW
>Mature_221_residues
MKNVLILGASGGIGAALTAACKARGDVVTGLSRSGDGFDITDDASVAQHLASLSAPFDLIIVATGALEINGAVPEKSIRN
VTAQAMLDQFELNAVGPALVLSHAARLLPRDRPSVFAVLSARVGSIGDNKIGGWISYRSAKAAVNQVVRTASIELARTHP
QSVCVALHPGTVQTAFTEKYLGRHPSVPASEAAHNLLRVVDGLSAAQTGRFFDWAGKEVAW

Specific function: Cell-cell signaling protein required for fruiting body morphogenesis. Necessary for cellular aggregation, for spore differentiation, and for gene expression that is initiated after 6 hour of starvation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To yeast YKL071W [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: NA

Molecular weight: Translated: 23002; Mature: 23002

Theoretical pI: Translated: 8.76; Mature: 8.76

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNVLILGASGGIGAALTAACKARGDVVTGLSRSGDGFDITDDASVAQHLASLSAPFDLI
CCCEEEEECCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE
IVATGALEINGAVPEKSIRNVTAQAMLDQFELNAVGPALVLSHAARLLPRDRPSVFAVLS
EEEECCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHH
ARVGSIGDNKIGGWISYRSAKAAVNQVVRTASIELARTHPQSVCVALHPGTVQTAFTEKY
HHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
LGRHPSVPASEAAHNLLRVVDGLSAAQTGRFFDWAGKEVAW
HCCCCCCCHHHHHHHHHHHHHCCCHHHCCCEECCCCCCCCC
>Mature Secondary Structure
MKNVLILGASGGIGAALTAACKARGDVVTGLSRSGDGFDITDDASVAQHLASLSAPFDLI
CCCEEEEECCCCHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCHHHHHHHHHHCCCEEEE
IVATGALEINGAVPEKSIRNVTAQAMLDQFELNAVGPALVLSHAARLLPRDRPSVFAVLS
EEEECCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHH
ARVGSIGDNKIGGWISYRSAKAAVNQVVRTASIELARTHPQSVCVALHPGTVQTAFTEKY
HHHCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH
LGRHPSVPASEAAHNLLRVVDGLSAAQTGRFFDWAGKEVAW
HCCCCCCCHHHHHHHHHHHHHCCCHHHCCCEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2152896; 2107980; 2118510; 1372277 [H]