Click here to switch to the map view.

The map label for this gene is 110678520

Identifier: 110678520

GI number: 110678520

Start: 1155639

End: 1156028

Strand: Direct

Name: 110678520

Synonym: RD1_1191

Alternate gene names: NA

Gene position: 1155639-1156028 (Clockwise)

Preceding gene: 110678519

Following gene: 110678521

Centisome position: 27.96

GC content: 55.13

Gene sequence:

>390_bases
ATGACACAGATGCCGCAAACCAATGCAAGGGTTCATGCCGGACGCATGGCATACCATGCAGGCCTCTCGGCAGAGGCATC
GGTCATTCGTGAATACGAAAGTCACGGCTATGTTTTCGAGGCGCAAAGGTGGCGGGGGCAGGTGGGCGAAATTGATCTGG
TCCTGCGAAAAAGTGGATTGGTTGTCTTTGTCGAGGTGAAGAAAAGCAAATCCTTCGAACGTGCCGCCTTGCGCATTTCC
CCCACTCAAAAGCGCCGCATCTTCGCAACAGGTGAGGAGTTTGTCGCGCAAGAACCGCAAGGGTTGCTGACAGATATGCG
ATTTGATGTGGCGCTGGTGGATGCTGCGGGCGCGGTGCAAATACTGGAAAATGCGCTGTCCGAGGGGTGA

Upstream 100 bases:

>100_bases
TGGCAGGGCATTCCATGCGGGATGCCGTGGATATGGTTGCCAAGGCGCATAACATACCGCGCCGACAGGTCTATCAGATG
GCGCTTGCCCTGAACGAAGG

Downstream 100 bases:

>100_bases
AAACTCTGTTGCTGCCCATTGCGGTCCTGAGCTTGCTGCGCCATTTATAGCGCCTGATGAAATACCTGAGGCATCGTGCA
GTACCCAACGCATTGACATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MTQMPQTNARVHAGRMAYHAGLSAEASVIREYESHGYVFEAQRWRGQVGEIDLVLRKSGLVVFVEVKKSKSFERAALRIS
PTQKRRIFATGEEFVAQEPQGLLTDMRFDVALVDAAGAVQILENALSEG

Sequences:

>Translated_129_residues
MTQMPQTNARVHAGRMAYHAGLSAEASVIREYESHGYVFEAQRWRGQVGEIDLVLRKSGLVVFVEVKKSKSFERAALRIS
PTQKRRIFATGEEFVAQEPQGLLTDMRFDVALVDAAGAVQILENALSEG
>Mature_128_residues
TQMPQTNARVHAGRMAYHAGLSAEASVIREYESHGYVFEAQRWRGQVGEIDLVLRKSGLVVFVEVKKSKSFERAALRISP
TQKRRIFATGEEFVAQEPQGLLTDMRFDVALVDAAGAVQILENALSEG

Specific function: Unknown

COG id: COG0792

COG function: function code L; Predicted endonuclease distantly related to archaeal Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0102 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1191_ROSDO (Q16B02)

Other databases:

- EMBL:   CP000362
- RefSeq:   YP_681527.1
- ProteinModelPortal:   Q16B02
- STRING:   Q16B02
- GeneID:   4197518
- GenomeReviews:   CP000362_GR
- KEGG:   rde:RD1_1191
- NMPDR:   fig|375451.6.peg.1111
- eggNOG:   NOG71272
- HOGENOM:   HBG710155
- OMA:   IREYESH
- BioCyc:   RDEN375451:RD1_1191-MONOMER
- HAMAP:   MF_00048
- InterPro:   IPR011856
- InterPro:   IPR011335
- InterPro:   IPR003509
- Gene3D:   G3DSA:3.40.1350.10

Pfam domain/function: PF02021 UPF0102; SSF52980 Restrict_endonuc_II-like_core

EC number: NA

Molecular weight: Translated: 14323; Mature: 14191

Theoretical pI: Translated: 7.79; Mature: 7.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQMPQTNARVHAGRMAYHAGLSAEASVIREYESHGYVFEAQRWRGQVGEIDLVLRKSGL
CCCCCCCCCEEECCHHHHHCCCCCHHHHHHHHHHCCEEEEEHHHCCCCCCEEEEEECCCE
VVFVEVKKSKSFERAALRISPTQKRRIFATGEEFVAQEPQGLLTDMRFDVALVDAAGAVQ
EEEEEECCCCCCCCEEEEECCCCCCEEEECCHHHHHCCCCCHHHHCEEEEEEECCCCHHH
ILENALSEG
HHHHHHCCC
>Mature Secondary Structure 
TQMPQTNARVHAGRMAYHAGLSAEASVIREYESHGYVFEAQRWRGQVGEIDLVLRKSGL
CCCCCCCCEEECCHHHHHCCCCCHHHHHHHHHHCCEEEEEHHHCCCCCCEEEEEECCCE
VVFVEVKKSKSFERAALRISPTQKRRIFATGEEFVAQEPQGLLTDMRFDVALVDAAGAVQ
EEEEEECCCCCCCCEEEEECCCCCCEEEECCHHHHHCCCCCHHHHCEEEEEEECCCCHHH
ILENALSEG
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA