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The map label for this gene is 110678496

Identifier: 110678496

GI number: 110678496

Start: 1127593

End: 1128129

Strand: Direct

Name: 110678496

Synonym: RD1_1166

Alternate gene names: NA

Gene position: 1127593-1128129 (Clockwise)

Preceding gene: 110678495

Following gene: 110678497

Centisome position: 27.28

GC content: 57.54

Gene sequence:

>537_bases
ATGGCCGCAACACCAGAGCATGCAGCACGCGTACTTGGGCTTGACGTTTGGGCAAGTATGGAAGATGTGCGGCGCGCACG
CCGTGAACTGGCCATGAAGTATCACCCGGATCGCCATTCAGATGTCACCACATCCAACCGTCACATGGCGCGTGTCAATG
CGGCGGCTGACACGCTGATCGCGTATATTTCAGGCAAGTCCAAGCCAGGGGTCAAAACCCGGCGGCCGAACTACACAGAC
TTTTCCAATACGTGCAAAACTGAAACAGAAAACAGCAAGCAGACAAGTAAAACGCATGGCGCAACTGCACAAAATCCGCA
TGCGCAGACCGATACAAGAGCGGTTGCACGGGGGACGGGCGGAACCGCGGTCAATGAGTGTATGGCGCCCGCTTTGGTTT
CTGAGCATTCTGCGCGCGACAATGAATTGATCCGTGCGGCGGCTCGGTCTTACCAGACGGTCCTGCAGCAGATTTCCCAA
CCTGACAGGCTGCGCTCCGTCGATGCGCGCGCGTTGCGTTTCACGACCGCTGCCTAG

Upstream 100 bases:

>100_bases
GCCCTGCGATTAACCACAAACAAATATCAACGTATTTGTTTAAAGTTTTTTACAATATGAAAGGAGCACAGTCAGTTTAT
TAAAATGGTTTGGATTTCTC

Downstream 100 bases:

>100_bases
AACGTCCGGGCTGAAGCATGGACCGGGGGATCCCCTGAGTGCTGATCTTTGATTGACCCTTTTTGGCAGGGTTGGTCGTA
TGAGCATCTTAGACTGCTGC

Product: DnaJ domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 177

Protein sequence:

>178_residues
MAATPEHAARVLGLDVWASMEDVRRARRELAMKYHPDRHSDVTTSNRHMARVNAAADTLIAYISGKSKPGVKTRRPNYTD
FSNTCKTETENSKQTSKTHGATAQNPHAQTDTRAVARGTGGTAVNECMAPALVSEHSARDNELIRAAARSYQTVLQQISQ
PDRLRSVDARALRFTTAA

Sequences:

>Translated_178_residues
MAATPEHAARVLGLDVWASMEDVRRARRELAMKYHPDRHSDVTTSNRHMARVNAAADTLIAYISGKSKPGVKTRRPNYTD
FSNTCKTETENSKQTSKTHGATAQNPHAQTDTRAVARGTGGTAVNECMAPALVSEHSARDNELIRAAARSYQTVLQQISQ
PDRLRSVDARALRFTTAA
>Mature_177_residues
AATPEHAARVLGLDVWASMEDVRRARRELAMKYHPDRHSDVTTSNRHMARVNAAADTLIAYISGKSKPGVKTRRPNYTDF
SNTCKTETENSKQTSKTHGATAQNPHAQTDTRAVARGTGGTAVNECMAPALVSEHSARDNELIRAAARSYQTVLQQISQP
DRLRSVDARALRFTTAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19516; Mature: 19385

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS50076 DNAJ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAATPEHAARVLGLDVWASMEDVRRARRELAMKYHPDRHSDVTTSNRHMARVNAAADTLI
CCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
AYISGKSKPGVKTRRPNYTDFSNTCKTETENSKQTSKTHGATAQNPHAQTDTRAVARGTG
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHCCCC
GTAVNECMAPALVSEHSARDNELIRAAARSYQTVLQQISQPDRLRSVDARALRFTTAA
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEECCC
>Mature Secondary Structure 
AATPEHAARVLGLDVWASMEDVRRARRELAMKYHPDRHSDVTTSNRHMARVNAAADTLI
CCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
AYISGKSKPGVKTRRPNYTDFSNTCKTETENSKQTSKTHGATAQNPHAQTDTRAVARGTG
HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCHHHHHHCCCC
GTAVNECMAPALVSEHSARDNELIRAAARSYQTVLQQISQPDRLRSVDARALRFTTAA
CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA