| Definition | Roseobacter denitrificans OCh 114, complete genome. |
|---|---|
| Accession | NC_008209 |
| Length | 4,133,097 |
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The map label for this gene is idnO [H]
Identifier: 110678444
GI number: 110678444
Start: 1061133
End: 1061891
Strand: Direct
Name: idnO [H]
Synonym: RD1_1109
Alternate gene names: 110678444
Gene position: 1061133-1061891 (Clockwise)
Preceding gene: 110678439
Following gene: 110678445
Centisome position: 25.67
GC content: 62.58
Gene sequence:
>759_bases ATGAGCCTGAGCCTATTTGACCTGACGGGCCGCCGCGCCCTGATTACGGGATCGTCGCAAGGCATCGGCTTTGCACTCGC CAAGGGCCTGCAAGCGGCGGGCGCTGACATCGTGCTGAACGGGCGCGACACGGACAAACTCGCCGCTGCCGCCGCGCAGT TGGGCGAGGGGACGCATCAGCTGCCCTTTGATGCAACGGACCACGCGGGTGTGCGTGCGGCGGTGGACGGGTTCGAGGCC GAGCACGGGGCGATTGATATCCTTGTGAATAATGCCGGAATGCAGCACCGCACCGCCCTTGAGGATTTCCCCGCGGATGC CTTTGAAAAGCTGATGCAGACAAACATCGCCAGTGTTTTCCATGTGGGCCAAGCCTGCGCGCGCCATATGATCCGCCGGA GCAAGGGCAAGATCATCAATATCGCCTCGGTGCAGACCGCGCTGGCACGGCCCGGGATCGCGCCTTACACGATGACCAAG GGCGCGGTTGCCAACCTGACCAAAGGCATGGCCACCGACTGGGCGCAATACGGGTTGCAGTGCAATGGGCTGGCGCCGGG GTATTTCGACACGCCGCTGAATGCCGCCTTGGTCGCGGACCCCGAGTTCACGACGTGGCTTGAAAAACGCACCCCTGCGG GGCGCTGGGGCAAGGTCGAGGAACTGGTCGGCACCTGTATTTTTCTGGCATCGGATGCGTCATCTTTTGTCAATGGGACG ACCGTATTCGTGGATGGCGGGATCACGGCATCGCTTTAG
Upstream 100 bases:
>100_bases GGGCTGTTCAAGGGGCGGGTTGCCCGGCGTCCTTGACTCTGAGGGTTGGGGGTAAAATAAGCGGGACAGATCGCAATTGT CGAGCACAAAGAGGAATATC
Downstream 100 bases:
>100_bases ACGCAAAGCGCTTTTCAAAGCGGCCCATGACGTGATCAACTCGACCCCATGATACCTGAGAGCACGAAGCGACCTGTGGG CAATTCGCTGTTTGTGGCTG
Product: gluconate 5-dehydrogenase
Products: NA
Alternate protein names: 5-keto-D-gluconate 5-reductase [H]
Number of amino acids: Translated: 252; Mature: 251
Protein sequence:
>252_residues MSLSLFDLTGRRALITGSSQGIGFALAKGLQAAGADIVLNGRDTDKLAAAAAQLGEGTHQLPFDATDHAGVRAAVDGFEA EHGAIDILVNNAGMQHRTALEDFPADAFEKLMQTNIASVFHVGQACARHMIRRSKGKIINIASVQTALARPGIAPYTMTK GAVANLTKGMATDWAQYGLQCNGLAPGYFDTPLNAALVADPEFTTWLEKRTPAGRWGKVEELVGTCIFLASDASSFVNGT TVFVDGGITASL
Sequences:
>Translated_252_residues MSLSLFDLTGRRALITGSSQGIGFALAKGLQAAGADIVLNGRDTDKLAAAAAQLGEGTHQLPFDATDHAGVRAAVDGFEA EHGAIDILVNNAGMQHRTALEDFPADAFEKLMQTNIASVFHVGQACARHMIRRSKGKIINIASVQTALARPGIAPYTMTK GAVANLTKGMATDWAQYGLQCNGLAPGYFDTPLNAALVADPEFTTWLEKRTPAGRWGKVEELVGTCIFLASDASSFVNGT TVFVDGGITASL >Mature_251_residues SLSLFDLTGRRALITGSSQGIGFALAKGLQAAGADIVLNGRDTDKLAAAAAQLGEGTHQLPFDATDHAGVRAAVDGFEAE HGAIDILVNNAGMQHRTALEDFPADAFEKLMQTNIASVFHVGQACARHMIRRSKGKIINIASVQTALARPGIAPYTMTKG AVANLTKGMATDWAQYGLQCNGLAPGYFDTPLNAALVADPEFTTWLEKRTPAGRWGKVEELVGTCIFLASDASSFVNGTT VFVDGGITASL
Specific function: Involved in the non-phosphorylative, ketogenic oxidation of glucose and oxidizes gluconate to 5-ketogluconate. Dependent on NADP, almost inactive with NAD [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI7705925, Length=252, Percent_Identity=31.7460317460317, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI32483357, Length=252, Percent_Identity=31.3492063492063, Blast_Score=110, Evalue=1e-24, Organism=Homo sapiens, GI19923817, Length=254, Percent_Identity=30.7086614173228, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI66933014, Length=184, Percent_Identity=34.7826086956522, Blast_Score=101, Evalue=6e-22, Organism=Homo sapiens, GI7706318, Length=203, Percent_Identity=30.5418719211823, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI20149619, Length=212, Percent_Identity=31.1320754716981, Blast_Score=95, Evalue=6e-20, Organism=Homo sapiens, GI59889578, Length=222, Percent_Identity=32.8828828828829, Blast_Score=95, Evalue=7e-20, Organism=Homo sapiens, GI126723750, Length=256, Percent_Identity=31.25, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI40254992, Length=239, Percent_Identity=26.7782426778243, Blast_Score=91, Evalue=1e-18, Organism=Homo sapiens, GI15277342, Length=251, Percent_Identity=27.8884462151394, Blast_Score=89, Evalue=3e-18, Organism=Homo sapiens, GI4503301, Length=225, Percent_Identity=28, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI10190704, Length=245, Percent_Identity=27.3469387755102, Blast_Score=85, Evalue=8e-17, Organism=Homo sapiens, GI4758504, Length=262, Percent_Identity=28.6259541984733, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI7705855, Length=195, Percent_Identity=29.7435897435897, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=26.9387755102041, Blast_Score=75, Evalue=6e-14, Organism=Homo sapiens, GI4503817, Length=193, Percent_Identity=27.4611398963731, Blast_Score=72, Evalue=7e-13, Organism=Homo sapiens, GI4557649, Length=197, Percent_Identity=29.4416243654822, Blast_Score=71, Evalue=7e-13, Organism=Homo sapiens, GI210032110, Length=203, Percent_Identity=25.1231527093596, Blast_Score=71, Evalue=7e-13, Organism=Homo sapiens, GI126723191, Length=184, Percent_Identity=30.4347826086957, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI83715985, Length=262, Percent_Identity=27.8625954198473, Blast_Score=70, Evalue=1e-12, Organism=Homo sapiens, GI209862901, Length=239, Percent_Identity=28.4518828451883, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI19923983, Length=239, Percent_Identity=28.4518828451883, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI142976729, Length=191, Percent_Identity=26.1780104712042, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI4502601, Length=180, Percent_Identity=31.6666666666667, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI4502599, Length=163, Percent_Identity=31.2883435582822, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI1790717, Length=251, Percent_Identity=47.4103585657371, Blast_Score=236, Evalue=1e-63, Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=40.5622489959839, Blast_Score=166, Evalue=1e-42, Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=33.3333333333333, Blast_Score=144, Evalue=4e-36, Organism=Escherichia coli, GI1787335, Length=243, Percent_Identity=32.9218106995885, Blast_Score=143, Evalue=9e-36, Organism=Escherichia coli, GI87082100, Length=251, Percent_Identity=36.2549800796813, Blast_Score=136, Evalue=2e-33, Organism=Escherichia coli, GI1788459, Length=251, Percent_Identity=29.4820717131474, Blast_Score=102, Evalue=3e-23, Organism=Escherichia coli, GI1787905, Length=243, Percent_Identity=30.4526748971193, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI2367175, Length=248, Percent_Identity=28.6290322580645, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=28.4046692607004, Blast_Score=91, Evalue=8e-20, Organism=Escherichia coli, GI2367365, Length=244, Percent_Identity=30.7377049180328, Blast_Score=87, Evalue=9e-19, Organism=Escherichia coli, GI1789378, Length=246, Percent_Identity=28.0487804878049, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1789057, Length=253, Percent_Identity=26.8774703557312, Blast_Score=83, Evalue=1e-17, Organism=Escherichia coli, GI1787820, Length=180, Percent_Identity=26.6666666666667, Blast_Score=73, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17560150, Length=259, Percent_Identity=30.8880308880309, Blast_Score=116, Evalue=1e-26, Organism=Caenorhabditis elegans, GI17562908, Length=269, Percent_Identity=33.0855018587361, Blast_Score=114, Evalue=4e-26, Organism=Caenorhabditis elegans, GI17555706, Length=243, Percent_Identity=30.0411522633745, Blast_Score=110, Evalue=8e-25, Organism=Caenorhabditis elegans, GI17562906, Length=263, Percent_Identity=31.9391634980989, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI25147288, Length=246, Percent_Identity=30.8943089430894, Blast_Score=109, Evalue=1e-24, Organism=Caenorhabditis elegans, GI17560676, Length=253, Percent_Identity=29.6442687747036, Blast_Score=107, Evalue=6e-24, Organism=Caenorhabditis elegans, GI17562990, Length=259, Percent_Identity=29.3436293436293, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI71994600, Length=246, Percent_Identity=30.8943089430894, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI71994604, Length=245, Percent_Identity=31.0204081632653, Blast_Score=103, Evalue=6e-23, Organism=Caenorhabditis elegans, GI17561402, Length=258, Percent_Identity=30.2325581395349, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17536651, Length=254, Percent_Identity=30.7086614173228, Blast_Score=102, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17536025, Length=251, Percent_Identity=31.0756972111554, Blast_Score=100, Evalue=7e-22, Organism=Caenorhabditis elegans, GI17531453, Length=267, Percent_Identity=29.5880149812734, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=27.9352226720648, Blast_Score=100, Evalue=1e-21, Organism=Caenorhabditis elegans, GI72000259, Length=263, Percent_Identity=30.7984790874525, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17559104, Length=258, Percent_Identity=29.0697674418605, Blast_Score=98, Evalue=4e-21, Organism=Caenorhabditis elegans, GI193204405, Length=260, Percent_Identity=29.6153846153846, Blast_Score=97, Evalue=7e-21, Organism=Caenorhabditis elegans, GI17560220, Length=260, Percent_Identity=29.2307692307692, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17562910, Length=262, Percent_Identity=29.0076335877863, Blast_Score=96, Evalue=2e-20, Organism=Caenorhabditis elegans, GI17544670, Length=262, Percent_Identity=29.7709923664122, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17562904, Length=259, Percent_Identity=26.6409266409266, Blast_Score=95, Evalue=4e-20, Organism=Caenorhabditis elegans, GI17561272, Length=251, Percent_Identity=30.6772908366534, Blast_Score=94, Evalue=7e-20, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=29.6992481203008, Blast_Score=94, Evalue=9e-20, Organism=Caenorhabditis elegans, GI17563726, Length=255, Percent_Identity=28.6274509803922, Blast_Score=92, Evalue=2e-19, Organism=Caenorhabditis elegans, GI17560332, Length=270, Percent_Identity=28.8888888888889, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=28.5171102661597, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17538182, Length=259, Percent_Identity=31.2741312741313, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI17551412, Length=266, Percent_Identity=28.5714285714286, Blast_Score=81, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17565030, Length=267, Percent_Identity=29.9625468164794, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI32563809, Length=202, Percent_Identity=24.7524752475248, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17507613, Length=202, Percent_Identity=24.7524752475248, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI71997402, Length=166, Percent_Identity=30.1204819277108, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17564282, Length=188, Percent_Identity=25, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI71982365, Length=192, Percent_Identity=27.6041666666667, Blast_Score=64, Evalue=8e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=248, Percent_Identity=22.5806451612903, Blast_Score=74, Evalue=2e-14, Organism=Saccharomyces cerevisiae, GI6320089, Length=200, Percent_Identity=29, Blast_Score=66, Evalue=6e-12, Organism=Drosophila melanogaster, GI21357041, Length=242, Percent_Identity=34.297520661157, Blast_Score=128, Evalue=3e-30, Organism=Drosophila melanogaster, GI28571526, Length=242, Percent_Identity=35.1239669421488, Blast_Score=125, Evalue=2e-29, Organism=Drosophila melanogaster, GI24644339, Length=250, Percent_Identity=32.4, Blast_Score=123, Evalue=1e-28, Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=31.6, Blast_Score=117, Evalue=8e-27, Organism=Drosophila melanogaster, GI23397609, Length=247, Percent_Identity=31.5789473684211, Blast_Score=112, Evalue=2e-25, Organism=Drosophila melanogaster, GI24643142, Length=245, Percent_Identity=31.0204081632653, Blast_Score=106, Evalue=2e-23, Organism=Drosophila melanogaster, GI21355319, Length=249, Percent_Identity=27.3092369477912, Blast_Score=102, Evalue=2e-22, Organism=Drosophila melanogaster, GI24644337, Length=251, Percent_Identity=31.8725099601594, Blast_Score=93, Evalue=1e-19, Organism=Drosophila melanogaster, GI28574402, Length=198, Percent_Identity=30.3030303030303, Blast_Score=88, Evalue=5e-18, Organism=Drosophila melanogaster, GI24584744, Length=198, Percent_Identity=30.3030303030303, Blast_Score=88, Evalue=6e-18, Organism=Drosophila melanogaster, GI161076933, Length=190, Percent_Identity=29.4736842105263, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI24584748, Length=190, Percent_Identity=29.4736842105263, Blast_Score=86, Evalue=2e-17, Organism=Drosophila melanogaster, GI17737361, Length=257, Percent_Identity=29.9610894941634, Blast_Score=86, Evalue=3e-17, Organism=Drosophila melanogaster, GI21358495, Length=194, Percent_Identity=28.3505154639175, Blast_Score=77, Evalue=8e-15, Organism=Drosophila melanogaster, GI24641232, Length=197, Percent_Identity=31.4720812182741, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24640442, Length=194, Percent_Identity=28.3505154639175, Blast_Score=76, Evalue=2e-14, Organism=Drosophila melanogaster, GI116007236, Length=195, Percent_Identity=28.7179487179487, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI281364892, Length=174, Percent_Identity=27.5862068965517, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI21357673, Length=192, Percent_Identity=28.6458333333333, Blast_Score=72, Evalue=2e-13, Organism=Drosophila melanogaster, GI116007238, Length=137, Percent_Identity=31.3868613138686, Blast_Score=69, Evalue=4e-12, Organism=Drosophila melanogaster, GI21356301, Length=199, Percent_Identity=27.1356783919598, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI28571387, Length=129, Percent_Identity=34.8837209302326, Blast_Score=67, Evalue=9e-12, Organism=Drosophila melanogaster, GI24584752, Length=198, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: =1.1.1.69 [H]
Molecular weight: Translated: 26422; Mature: 26291
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLSLFDLTGRRALITGSSQGIGFALAKGLQAAGADIVLNGRDTDKLAAAAAQLGEGTHQ CCEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCCC LPFDATDHAGVRAAVDGFEAEHGAIDILVNNAGMQHRTALEDFPADAFEKLMQTNIASVF CCCCCCCCCCCCHHHCCCCCCCCEEEEEECCCCCCHHHHHHHCCHHHHHHHHHHHHHHHH HVGQACARHMIRRSKGKIINIASVQTALARPGIAPYTMTKGAVANLTKGMATDWAQYGLQ HHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHCEE CNGLAPGYFDTPLNAALVADPEFTTWLEKRTPAGRWGKVEELVGTCIFLASDASSFVNGT ECCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCHHHHHHHHHEEECCCHHHCCCE TVFVDGGITASL EEEEECCEEECC >Mature Secondary Structure SLSLFDLTGRRALITGSSQGIGFALAKGLQAAGADIVLNGRDTDKLAAAAAQLGEGTHQ CEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCCC LPFDATDHAGVRAAVDGFEAEHGAIDILVNNAGMQHRTALEDFPADAFEKLMQTNIASVF CCCCCCCCCCCCHHHCCCCCCCCEEEEEECCCCCCHHHHHHHCCHHHHHHHHHHHHHHHH HVGQACARHMIRRSKGKIINIASVQTALARPGIAPYTMTKGAVANLTKGMATDWAQYGLQ HHHHHHHHHHHHHCCCCEEEEHHHHHHHHCCCCCCEEECCCHHHHHHHHHHHHHHHHCEE CNGLAPGYFDTPLNAALVADPEFTTWLEKRTPAGRWGKVEELVGTCIFLASDASSFVNGT ECCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCHHHHHHHHHEEECCCHHHCCCE TVFVDGGITASL EEEEECCEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7751271 [H]