Click here to switch to the map view.

The map label for this gene is 110678385

Identifier: 110678385

GI number: 110678385

Start: 1006487

End: 1007263

Strand: Direct

Name: 110678385

Synonym: RD1_1043

Alternate gene names: NA

Gene position: 1006487-1007263 (Clockwise)

Preceding gene: 110678383

Following gene: 110678386

Centisome position: 24.35

GC content: 56.76

Gene sequence:

>777_bases
ATGGCAAAACCGATTATGGCCAAAGCCACCGCTGTCTGGCTGGTGGATAACACGACCCTCAGCTTCAAGCAGATTGCCGA
TTTTGTCGGAATGCACGAACTTGAGGTGCAGGGGATCGCGGATGGCGATGTGGCGCAGGGCGTCAAGGGTTTTGACCCGA
TTGCCAACAACCAGCTGACGCAGGATGAAATCGACACGGCGCAAAACAACCCGCTGCACAAGCTCAAGCTCAAATTCAAT
GCCGCAGCACAGGGCGAGGAAAAGCGCCGTGGTCCACGTTATACACCGCTGTCCAAACGTCAGGACCGTCCGGCATCCAT
TCTGTGGCTGGTCAAATTCCACCCCGAACTGACAGACGGTCAGATCAGCAAGCTGATCGGGACAACCAAACCGACCATTC
AGGCCATTCGCGAACGCACGCATTGGAACATCAGCAACATTCAACCGATTGACCCGGTGGCACTGGGGCTGTGCAAGCAA
TCCGAACTGGACATGGCCGTGCAGAAAGCTGCCGCCAAAAAGGCCGCCGATGCGCCGGTGATGAGCGATGACGAACGCCG
CAAATTGGTCAGCACGGAACAAAGCCTCGGCATGGAGGCAGAGCCCAAGATCCCGACCGCCATCGAAGGGCTGGAGACGT
TTACACTGTCAGGTGACAGCGCGAAGGATGACGAAGAAGAGTCAGCGGGTGATTTCTCCGATGCGGATAGCTTCTTTAAC
CTGCCCGACGGCACGCATGACGATGAAGACGAAGATGAAGCGGCGGACAAACGCTGA

Upstream 100 bases:

>100_bases
GCGACAGTTCCCCCACAATGGAAACCGTTCCGAGGCTTCGGAACCGCCCTTCAAGGCGATTGGGTCGGCGTGGGGAATGC
GTATTGATAGGAGCACCACA

Downstream 100 bases:

>100_bases
ACCCATGCGGCTTGTCTGATTTATTCAATCCCCGGTGCATTGTCGCCGGGGTTTTTGTTTCGGGGCCGGGCCGATGGCTT
GTGTTCCAGCACCAAAGCGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MAKPIMAKATAVWLVDNTTLSFKQIADFVGMHELEVQGIADGDVAQGVKGFDPIANNQLTQDEIDTAQNNPLHKLKLKFN
AAAQGEEKRRGPRYTPLSKRQDRPASILWLVKFHPELTDGQISKLIGTTKPTIQAIRERTHWNISNIQPIDPVALGLCKQ
SELDMAVQKAAAKKAADAPVMSDDERRKLVSTEQSLGMEAEPKIPTAIEGLETFTLSGDSAKDDEEESAGDFSDADSFFN
LPDGTHDDEDEDEAADKR

Sequences:

>Translated_258_residues
MAKPIMAKATAVWLVDNTTLSFKQIADFVGMHELEVQGIADGDVAQGVKGFDPIANNQLTQDEIDTAQNNPLHKLKLKFN
AAAQGEEKRRGPRYTPLSKRQDRPASILWLVKFHPELTDGQISKLIGTTKPTIQAIRERTHWNISNIQPIDPVALGLCKQ
SELDMAVQKAAAKKAADAPVMSDDERRKLVSTEQSLGMEAEPKIPTAIEGLETFTLSGDSAKDDEEESAGDFSDADSFFN
LPDGTHDDEDEDEAADKR
>Mature_257_residues
AKPIMAKATAVWLVDNTTLSFKQIADFVGMHELEVQGIADGDVAQGVKGFDPIANNQLTQDEIDTAQNNPLHKLKLKFNA
AAQGEEKRRGPRYTPLSKRQDRPASILWLVKFHPELTDGQISKLIGTTKPTIQAIRERTHWNISNIQPIDPVALGLCKQS
ELDMAVQKAAAKKAADAPVMSDDERRKLVSTEQSLGMEAEPKIPTAIEGLETFTLSGDSAKDDEEESAGDFSDADSFFNL
PDGTHDDEDEDEAADKR

Specific function: Unknown

COG id: COG3820

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28326; Mature: 28195

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKPIMAKATAVWLVDNTTLSFKQIADFVGMHELEVQGIADGDVAQGVKGFDPIANNQLT
CCCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCCCC
QDEIDTAQNNPLHKLKLKFNAAAQGEEKRRGPRYTPLSKRQDRPASILWLVKFHPELTDG
HHHHHHCCCCCCEEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCH
QISKLIGTTKPTIQAIRERTHWNISNIQPIDPVALGLCKQSELDMAVQKAAAKKAADAPV
HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCC
MSDDERRKLVSTEQSLGMEAEPKIPTAIEGLETFTLSGDSAKDDEEESAGDFSDADSFFN
CCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCEEEEECCCCCCCCCHHHCCCCCCCHHCCC
LPDGTHDDEDEDEAADKR
CCCCCCCCCCHHHHCCCC
>Mature Secondary Structure 
AKPIMAKATAVWLVDNTTLSFKQIADFVGMHELEVQGIADGDVAQGVKGFDPIANNQLT
CCCCCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEECCCCCHHHHCCCCCCCCCCCCCC
QDEIDTAQNNPLHKLKLKFNAAAQGEEKRRGPRYTPLSKRQDRPASILWLVKFHPELTDG
HHHHHHCCCCCCEEEEEEECCCCCCHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCCH
QISKLIGTTKPTIQAIRERTHWNISNIQPIDPVALGLCKQSELDMAVQKAAAKKAADAPV
HHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHHCCCCC
MSDDERRKLVSTEQSLGMEAEPKIPTAIEGLETFTLSGDSAKDDEEESAGDFSDADSFFN
CCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCEEEEECCCCCCCCCHHHCCCCCCCHHCCC
LPDGTHDDEDEDEAADKR
CCCCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA