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The map label for this gene is yoaB [C]

Identifier: 110678386

GI number: 110678386

Start: 1007399

End: 1007740

Strand: Direct

Name: yoaB [C]

Synonym: RD1_1044

Alternate gene names: 110678386

Gene position: 1007399-1007740 (Clockwise)

Preceding gene: 110678385

Following gene: 110678399

Centisome position: 24.37

GC content: 54.68

Gene sequence:

>342_bases
ATGATTGAACGTATTGAAACCGGCATCAGATCATCGAAAATCGTGAAACATCAAGGTGTTGCTTATATCACCGGTCAAGT
CGGTGAGGGCGATACAATTCAGGAGCAAACCGCAGAGTGTTTGCGACGTCTGGATGCACTTTTGATCAAGGCGGGTTCAT
CGCGCGAGAAAATGCTGCGGGCGACGATCTGGCTGGCGGATATGAGTGATTTTGCCGGGCTGAACGAAGTGTGGAACGCA
TGGGTTCCCGAAGGGCACGCCCCGGCCCGCGCTTGTGGTGAGGCCAAGCTTGCGCGTCCTGAGTTGAAGGTGGAAATCAT
CGTCGATGCGGCCTACGGCTGA

Upstream 100 bases:

>100_bases
TGCATTGTCGCCGGGGTTTTTGTTTCGGGGCCGGGCCGATGGCTTGTGTTCCAGCACCAAAGCGGTCAGGCCTTCCCTAT
CTTATCAAAAAGGACATACC

Downstream 100 bases:

>100_bases
CTTAATTTAAAGCGTCATGCGAAAAACCTGAAGCACGTGAGCGATGCCTGAAATCAAGGGTTTCAACGCGTTACGTGATA
CCTGATGTTTGTGGTATTTC

Product: endoribonuclease L-PSP family protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 113; Mature: 113

Protein sequence:

>113_residues
MIERIETGIRSSKIVKHQGVAYITGQVGEGDTIQEQTAECLRRLDALLIKAGSSREKMLRATIWLADMSDFAGLNEVWNA
WVPEGHAPARACGEAKLARPELKVEIIVDAAYG

Sequences:

>Translated_113_residues
MIERIETGIRSSKIVKHQGVAYITGQVGEGDTIQEQTAECLRRLDALLIKAGSSREKMLRATIWLADMSDFAGLNEVWNA
WVPEGHAPARACGEAKLARPELKVEIIVDAAYG
>Mature_113_residues
MIERIETGIRSSKIVKHQGVAYITGQVGEGDTIQEQTAECLRRLDALLIKAGSSREKMLRATIWLADMSDFAGLNEVWNA
WVPEGHAPARACGEAKLARPELKVEIIVDAAYG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RutC family [H]

Homologues:

Organism=Escherichia coli, GI87081979, Length=111, Percent_Identity=45.945945945946, Blast_Score=92, Evalue=6e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013813
- InterPro:   IPR006175
- InterPro:   IPR019897 [H]

Pfam domain/function: PF01042 Ribonuc_L-PSP [H]

EC number: NA

Molecular weight: Translated: 12392; Mature: 12392

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIERIETGIRSSKIVKHQGVAYITGQVGEGDTIQEQTAECLRRLDALLIKAGSSREKMLR
CCCCHHHCCCCCHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ATIWLADMSDFAGLNEVWNAWVPEGHAPARACGEAKLARPELKVEIIVDAAYG
HHHHHHCCHHCCCHHHHHHCCCCCCCCCHHHHCCCCCCCCCEEEEEEEEECCC
>Mature Secondary Structure
MIERIETGIRSSKIVKHQGVAYITGQVGEGDTIQEQTAECLRRLDALLIKAGSSREKMLR
CCCCHHHCCCCCHHHHCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHH
ATIWLADMSDFAGLNEVWNAWVPEGHAPARACGEAKLARPELKVEIIVDAAYG
HHHHHHCCHHCCCHHHHHHCCCCCCCCCHHHHCCCCCCCCCEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA