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The map label for this gene is oprF [H]

Identifier: 110678301

GI number: 110678301

Start: 921367

End: 922326

Strand: Direct

Name: oprF [H]

Synonym: RD1_0954

Alternate gene names: 110678301

Gene position: 921367-922326 (Clockwise)

Preceding gene: 110678300

Following gene: 110678303

Centisome position: 22.29

GC content: 58.33

Gene sequence:

>960_bases
ATGATCAGATGTCATGCATCTTGCGTCGCGGTTGTGCTCGCGTTGATGGGATTTGCCGCCCCGCTTGCGGCACTTGAACT
GGACTTGCCCGCCAGTGCCAGGCTGACGCTGGAACGTGCATCCCCTCTGGACAGCTATGATCTGCCCATCGCGCCGTTTG
ACGGCGTTTCGGTCCCTTCCAAAACCATGGAAGGACGGGTTTTGCGCCGCAGCTGGCGGATATCTGCGCCCGGTTTGACC
CCGTTGCAGGTGATCACCCCGTTGCGCGACCAGTTACAGGCGCAGGGGTTTGATCTGGCTTTTGAATGTGATGCGCGGGT
CTGCGGGGGGTTTGACTTTCGCTTCAACATCGAGGTGCTGCCGGGCCCGAATATGTATGTCAACATTTCGCAGTACCGCT
ATCTGACAGCGTTTTCCACAAGGACGAACGGCCCCGGAAAAGCTGTTGGTGTTTTGGTCAGTACAACAGCATCGTCATCC
TATGTGCAGGTCGTTTTGGTTGATGAGGACATGGATGTGTCAGCAATCGTGCCTAAAGAGCGTCCGATAGAGCGTGAGAC
GATGCCCAAAGTGCAAGACGCGGAACAAGGCGTGCAGCTGCTGCGCCGGGACGGTCGCTATGTGTTGCCGGGGCTTGAGT
TCTCTGTCGGGACGTCGGATCTCGGACCGGGTCCGTTTTCGGCCTTGAAGGAGCTTTCTGATTTCCTGACGCGTTCGCAA
GATATGCGCGTTGCCTTGGTTGGGCATACCGATGCGACCGGCACGCTGGCGGCGAATATTTCCCTGTCACGCGCGCGCGC
CCGATCGGTGCGCAGCCGGTTGATTGAAACATATGGCGTGTCACCGGATCAGGTTGATGCGGAGGGCATGGGCTATCTGG
CACCGATTGCCTCAAACCTGACCGAAGAGGGGCGCAGGTTGAACCGCCGGGTTGAGGTCGTTCTGCTCAACACGCAATGA

Upstream 100 bases:

>100_bases
TCTGGGACATTGCCAACGTGGCGGGCTTTTTCAACATGACCAACCGGGTGGCAAGCGCGACGGATATGCGCCCGAATGTC
GAATATCATGCACAGGCCAG

Downstream 100 bases:

>100_bases
AACTGCGCCGTCCGCTCTGGGACGCCCCGCGTTGGTCAGGCTGTCACCTTACCATTCTGTCGGTCCTTTTTCGGCAAAGG
CATTGACCAGAAAATCGATG

Product: OmpA family domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 319; Mature: 319

Protein sequence:

>319_residues
MIRCHASCVAVVLALMGFAAPLAALELDLPASARLTLERASPLDSYDLPIAPFDGVSVPSKTMEGRVLRRSWRISAPGLT
PLQVITPLRDQLQAQGFDLAFECDARVCGGFDFRFNIEVLPGPNMYVNISQYRYLTAFSTRTNGPGKAVGVLVSTTASSS
YVQVVLVDEDMDVSAIVPKERPIERETMPKVQDAEQGVQLLRRDGRYVLPGLEFSVGTSDLGPGPFSALKELSDFLTRSQ
DMRVALVGHTDATGTLAANISLSRARARSVRSRLIETYGVSPDQVDAEGMGYLAPIASNLTEEGRRLNRRVEVVLLNTQ

Sequences:

>Translated_319_residues
MIRCHASCVAVVLALMGFAAPLAALELDLPASARLTLERASPLDSYDLPIAPFDGVSVPSKTMEGRVLRRSWRISAPGLT
PLQVITPLRDQLQAQGFDLAFECDARVCGGFDFRFNIEVLPGPNMYVNISQYRYLTAFSTRTNGPGKAVGVLVSTTASSS
YVQVVLVDEDMDVSAIVPKERPIERETMPKVQDAEQGVQLLRRDGRYVLPGLEFSVGTSDLGPGPFSALKELSDFLTRSQ
DMRVALVGHTDATGTLAANISLSRARARSVRSRLIETYGVSPDQVDAEGMGYLAPIASNLTEEGRRLNRRVEVVLLNTQ
>Mature_319_residues
MIRCHASCVAVVLALMGFAAPLAALELDLPASARLTLERASPLDSYDLPIAPFDGVSVPSKTMEGRVLRRSWRISAPGLT
PLQVITPLRDQLQAQGFDLAFECDARVCGGFDFRFNIEVLPGPNMYVNISQYRYLTAFSTRTNGPGKAVGVLVSTTASSS
YVQVVLVDEDMDVSAIVPKERPIERETMPKVQDAEQGVQLLRRDGRYVLPGLEFSVGTSDLGPGPFSALKELSDFLTRSQ
DMRVALVGHTDATGTLAANISLSRARARSVRSRLIETYGVSPDQVDAEGMGYLAPIASNLTEEGRRLNRRVEVVLLNTQ

Specific function: Has porin activity, forming small water-filled channels. Also has a structural role in determining cell shape and ability to grow in low-osmolarity medium [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=122, Percent_Identity=36.0655737704918, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR008722 [H]

Pfam domain/function: PF00691 OmpA; PF05736 OprF [H]

EC number: NA

Molecular weight: Translated: 34687; Mature: 34687

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRCHASCVAVVLALMGFAAPLAALELDLPASARLTLERASPLDSYDLPIAPFDGVSVPS
CEEECHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
KTMEGRVLRRSWRISAPGLTPLQVITPLRDQLQAQGFDLAFECDARVCGGFDFRFNIEVL
HHHCCHHHHHEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCEEECCEEEEEEEEEE
PGPNMYVNISQYRYLTAFSTRTNGPGKAVGVLVSTTASSSYVQVVLVDEDMDVSAIVPKE
CCCCEEEEEEHEEEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCEEECCCC
RPIERETMPKVQDAEQGVQLLRRDGRYVLPGLEFSVGTSDLGPGPFSALKELSDFLTRSQ
CCCCHHHCCCHHHHHHHHHHHHHCCCEEECCCEEECCCCCCCCCHHHHHHHHHHHHHCCC
DMRVALVGHTDATGTLAANISLSRARARSVRSRLIETYGVSPDQVDAEGMGYLAPIASNL
CCEEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
TEEGRRLNRRVEVVLLNTQ
HHHHHHHCCEEEEEEEECC
>Mature Secondary Structure
MIRCHASCVAVVLALMGFAAPLAALELDLPASARLTLERASPLDSYDLPIAPFDGVSVPS
CEEECHHHHHHHHHHHHHHHHHHHEEECCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCC
KTMEGRVLRRSWRISAPGLTPLQVITPLRDQLQAQGFDLAFECDARVCGGFDFRFNIEVL
HHHCCHHHHHEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCEEECCEEEEEEEEEE
PGPNMYVNISQYRYLTAFSTRTNGPGKAVGVLVSTTASSSYVQVVLVDEDMDVSAIVPKE
CCCCEEEEEEHEEEEEEEECCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCCEEECCCC
RPIERETMPKVQDAEQGVQLLRRDGRYVLPGLEFSVGTSDLGPGPFSALKELSDFLTRSQ
CCCCHHHCCCHHHHHHHHHHHHHCCCEEECCCEEECCCCCCCCCHHHHHHHHHHHHHCCC
DMRVALVGHTDATGTLAANISLSRARARSVRSRLIETYGVSPDQVDAEGMGYLAPIASNL
CCEEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH
TEEGRRLNRRVEVVLLNTQ
HHHHHHHCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2447060; 10984043 [H]