Click here to switch to the map view.

The map label for this gene is 110678222

Identifier: 110678222

GI number: 110678222

Start: 851263

End: 852225

Strand: Direct

Name: 110678222

Synonym: RD1_0875

Alternate gene names: NA

Gene position: 851263-852225 (Clockwise)

Preceding gene: 110678221

Following gene: 110678223

Centisome position: 20.6

GC content: 64.8

Gene sequence:

>963_bases
TTGTTTGAACTGGCCGACCCGTGGATTTTGCTCTTGTTGCCGCTGCCCTATCTGGCGGCGCGGTTCCTCGGGCCCGCGCA
GATGGCAGGCGGTGCGATCAAGGTGCCGGACCGGGTGGGCGATGGCTTGCTGGCAGCCGGGCGGCACCGGGCGGCGCGCT
CCGATCTGCGTCTGCAGCAAGGACTCCTGTGGGCGATCTGGGTGCTGCTCTTGCTGGCCGCAGCGGGGCCGCGCGATCTG
GCACCGGTCTCGGCGCTCAAGGTCACGGGGCGTGATCTGGCCATCGTACTGGATCTGTCCGGTTCCATGGTGCGCGATGA
TTTTGATCTTGATGGCCGTCAAGTCACGCGGCGCGATGCGGTCGCGACGGTTGGCGCGGATTTCGCGCGCCGTCGCGGCG
GGGATCGCGTGGCATTGGTCGTCTTTGGCTCTGAGGCATATTTTGCCGCGCCTTTTTCGTTCGATGTCGAAGCGATTGCG
CGCCAGATAGAGGGTGCGCAGATCGGCATATCGGGACGCGCGACCAGCATATCCGACGGGCTTGGCCTCGCGCTCAAACG
CATGGAGAACAGCGAGGCTGCGTCGCGGGTTGTGATACTGCTGTCGGACGGAGTCAATAATGCGGGGGCCACCAATCCGC
GCGGTGTGGCGGAACTGGCCGCGCAGATGGGCGTGCGGGTTCATACCATTGCGCTGGGTCCCAAGGATTTGAGCACTGCC
GATCCCGGTGAACGCGGGGTGGTGGATGCGGCAACCCTGCGCGCGATTTCCGAGATTTCGGGGGGGGAGAGTTTTCGCGT
CAGAACAACCGAAGATCTGGTCGCCGTGGGCGAAGCACTGGATGCACTGGAAGCCACCGACAGCGACGGCTTGGCCGCCG
AAGTGTTCCACGACTACTGGATGTGGCCTGCGGGTCTTGCGGCCTTGCTTGGCCTCGGCTACGGCTGGAGGGAGCTGACA
TGA

Upstream 100 bases:

>100_bases
CGCGCGCATGCGCCGGATCGGTATCATGCGGTGCGCGGCGCGCTCTACAAGCCGACGGGCGGTGTGGCGACTGCAACGCT
GGAGGCGGAGGTCAAACGCC

Downstream 100 bases:

>100_bases
GCGACCTTGCGCTGACCCTGCTACGCCCCTGGTGGCTTCTGGGGCTGCCTGTCTTGATCGGCGTCGGCTGGTGGATGTAT
ACGCGGCGCGGCGGGCTGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 320; Mature: 320

Protein sequence:

>320_residues
MFELADPWILLLLPLPYLAARFLGPAQMAGGAIKVPDRVGDGLLAAGRHRAARSDLRLQQGLLWAIWVLLLLAAAGPRDL
APVSALKVTGRDLAIVLDLSGSMVRDDFDLDGRQVTRRDAVATVGADFARRRGGDRVALVVFGSEAYFAAPFSFDVEAIA
RQIEGAQIGISGRATSISDGLGLALKRMENSEAASRVVILLSDGVNNAGATNPRGVAELAAQMGVRVHTIALGPKDLSTA
DPGERGVVDAATLRAISEISGGESFRVRTTEDLVAVGEALDALEATDSDGLAAEVFHDYWMWPAGLAALLGLGYGWRELT

Sequences:

>Translated_320_residues
MFELADPWILLLLPLPYLAARFLGPAQMAGGAIKVPDRVGDGLLAAGRHRAARSDLRLQQGLLWAIWVLLLLAAAGPRDL
APVSALKVTGRDLAIVLDLSGSMVRDDFDLDGRQVTRRDAVATVGADFARRRGGDRVALVVFGSEAYFAAPFSFDVEAIA
RQIEGAQIGISGRATSISDGLGLALKRMENSEAASRVVILLSDGVNNAGATNPRGVAELAAQMGVRVHTIALGPKDLSTA
DPGERGVVDAATLRAISEISGGESFRVRTTEDLVAVGEALDALEATDSDGLAAEVFHDYWMWPAGLAALLGLGYGWRELT
>Mature_320_residues
MFELADPWILLLLPLPYLAARFLGPAQMAGGAIKVPDRVGDGLLAAGRHRAARSDLRLQQGLLWAIWVLLLLAAAGPRDL
APVSALKVTGRDLAIVLDLSGSMVRDDFDLDGRQVTRRDAVATVGADFARRRGGDRVALVVFGSEAYFAAPFSFDVEAIA
RQIEGAQIGISGRATSISDGLGLALKRMENSEAASRVVILLSDGVNNAGATNPRGVAELAAQMGVRVHTIALGPKDLSTA
DPGERGVVDAATLRAISEISGGESFRVRTTEDLVAVGEALDALEATDSDGLAAEVFHDYWMWPAGLAALLGLGYGWRELT

Specific function: Unknown

COG id: COG2304

COG function: function code R; Uncharacterized protein containing a von Willebrand factor type A (vWA) domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 VWFA domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002035 [H]

Pfam domain/function: PF00092 VWA [H]

EC number: NA

Molecular weight: Translated: 33751; Mature: 33751

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS50234 VWFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFELADPWILLLLPLPYLAARFLGPAQMAGGAIKVPDRVGDGLLAAGRHRAARSDLRLQQ
CCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCEEECCHHHCCCHHHHCHHHHHHHHHHHHH
GLLWAIWVLLLLAAAGPRDLAPVSALKVTGRDLAIVLDLSGSMVRDDFDLDGRQVTRRDA
HHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCEEEEEECCCCEECCCCCCCCCHHHHHHH
VATVGADFARRRGGDRVALVVFGSEAYFAAPFSFDVEAIARQIEGAQIGISGRATSISDG
HHHHHHHHHHHCCCCEEEEEEECCCCEEECCCCCCHHHHHHHHCCCEEECCCCCCCCCCC
LGLALKRMENSEAASRVVILLSDGVNNAGATNPRGVAELAAQMGVRVHTIALGPKDLSTA
HHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCC
DPGERGVVDAATLRAISEISGGESFRVRTTEDLVAVGEALDALEATDSDGLAAEVFHDYW
CCCCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
MWPAGLAALLGLGYGWRELT
CCHHHHHHHHHCCCCHHCCC
>Mature Secondary Structure
MFELADPWILLLLPLPYLAARFLGPAQMAGGAIKVPDRVGDGLLAAGRHRAARSDLRLQQ
CCCCCCCHHHHHHHHHHHHHHHCCHHHHCCCEEECCHHHCCCHHHHCHHHHHHHHHHHHH
GLLWAIWVLLLLAAAGPRDLAPVSALKVTGRDLAIVLDLSGSMVRDDFDLDGRQVTRRDA
HHHHHHHHHHHHHCCCCCCCCCHHHEEECCCCEEEEEECCCCEECCCCCCCCCHHHHHHH
VATVGADFARRRGGDRVALVVFGSEAYFAAPFSFDVEAIARQIEGAQIGISGRATSISDG
HHHHHHHHHHHCCCCEEEEEEECCCCEEECCCCCCHHHHHHHHCCCEEECCCCCCCCCCC
LGLALKRMENSEAASRVVILLSDGVNNAGATNPRGVAELAAQMGVRVHTIALGPKDLSTA
HHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCCC
DPGERGVVDAATLRAISEISGGESFRVRTTEDLVAVGEALDALEATDSDGLAAEVFHDYW
CCCCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
MWPAGLAALLGLGYGWRELT
CCHHHHHHHHHCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9403685 [H]