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The map label for this gene is rbsC [H]

Identifier: 110678214

GI number: 110678214

Start: 841532

End: 842587

Strand: Direct

Name: rbsC [H]

Synonym: RD1_0866

Alternate gene names: 110678214

Gene position: 841532-842587 (Clockwise)

Preceding gene: 110678213

Following gene: 110678215

Centisome position: 20.36

GC content: 58.14

Gene sequence:

>1056_bases
ATGACGCCAACCCGCACGTCCGATCTGGCCATCATCCTGCGACAGCGTGCGCCTTTGCTCACGGTGATCGCGATTTTCCT
TCTGTTTTACACCTTTTACAACGCCAACCATCCGCGCGGGTTTTCAACGGCGGTCTATATCCAGAACTCGAACGAAGTCT
TTGCCCTTGTGATGGTTGCGATGGCCCAGACCGTGCCGGTGCTGCTGGGGGGGCTGGATTTATCCGTCGGCGCGGTCATG
ACGCTGGTCAACACGCTTGCCAGTCATCTGCTGTCCGGCAGTCCGCTGCAAATCGCATTCGGGTTTCTCATCTGCCTCGC
CACTGGGGCGCTGTGCGGTTTTGTGAACGGGTGCGTTGTGGTTTATGGCCGTATTCAGCCGATCATCGCGACACTGGCGA
CCGGTGCTATTTTCATGGGGCTGGCGCTGTTTCTGCGCCCCTCTCCCGGTGGCGATGTGGATGGAGACCTGGCTTGGGCG
ATGACCAATGATCTATACGAAATCGCTGCGACATATGGATTTTTTGATGGGGGGGAGGCCGCGTGGTTCGCGCCCATATC
GTGGATACCGGTGCCTGCCATCCTCATGGTCGCGGTGACGGTTTTCGTCTGGCTGCCCTTTGCGCGCTCGGTGACGGGGC
GGACGGTCTATGCCATAGGGTCGGGCGAAAGTGCGGCCTATATGTCGGGTCTCAACATTGATCGCGCCAAGATTGCGGCC
TTCACCTTGGGTGGTTTCTTTGCGGGGATCGGGGGGATTTACCTGACGCTGCAAACCTCCTCCGGGAACGCGGATATCCC
GCAGGCGGGGGCCTATACGCTGAATTCCATTGCTGCCGTGGTGATCGGTGGGACATCGCTGTTGGGCGGTGTTGGCACTG
CGATTGGCTCTATTTTTGGTGCATTGGTTCTACGCACCATCTCGTTCAACTTTCGCATCTTTGAAATAGACCCTCTTTTG
CAGCCTTTGTTCGAGGGCGTGGTCCTGCTGGGGGCCGTCAGTATCGGGGCCCTTGGGGTCTTGCGCATCAAGAACAAGTT
AGAGCTTTTCCGGTAG

Upstream 100 bases:

>100_bases
ATGTCATGTACGACGGGCAAATCGTGCGCGAACTGGCGGGCGATGACATTACCGAACACAACATCATTTCCAGCGCCCTG
AACATCAAGGAAGCCGCCCA

Downstream 100 bases:

>100_bases
GTCCCCATGGCAATCACTGACAACACTTCACAAGAAAAGAGCCGCTGGCTCTCGCCTGAAAACAAACCGATTGCGATTGC
TTCGGGCTTCATTGTTGTGA

Product: ribose ABC transporter, permease protein, putative

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 350

Protein sequence:

>351_residues
MTPTRTSDLAIILRQRAPLLTVIAIFLLFYTFYNANHPRGFSTAVYIQNSNEVFALVMVAMAQTVPVLLGGLDLSVGAVM
TLVNTLASHLLSGSPLQIAFGFLICLATGALCGFVNGCVVVYGRIQPIIATLATGAIFMGLALFLRPSPGGDVDGDLAWA
MTNDLYEIAATYGFFDGGEAAWFAPISWIPVPAILMVAVTVFVWLPFARSVTGRTVYAIGSGESAAYMSGLNIDRAKIAA
FTLGGFFAGIGGIYLTLQTSSGNADIPQAGAYTLNSIAAVVIGGTSLLGGVGTAIGSIFGALVLRTISFNFRIFEIDPLL
QPLFEGVVLLGAVSIGALGVLRIKNKLELFR

Sequences:

>Translated_351_residues
MTPTRTSDLAIILRQRAPLLTVIAIFLLFYTFYNANHPRGFSTAVYIQNSNEVFALVMVAMAQTVPVLLGGLDLSVGAVM
TLVNTLASHLLSGSPLQIAFGFLICLATGALCGFVNGCVVVYGRIQPIIATLATGAIFMGLALFLRPSPGGDVDGDLAWA
MTNDLYEIAATYGFFDGGEAAWFAPISWIPVPAILMVAVTVFVWLPFARSVTGRTVYAIGSGESAAYMSGLNIDRAKIAA
FTLGGFFAGIGGIYLTLQTSSGNADIPQAGAYTLNSIAAVVIGGTSLLGGVGTAIGSIFGALVLRTISFNFRIFEIDPLL
QPLFEGVVLLGAVSIGALGVLRIKNKLELFR
>Mature_350_residues
TPTRTSDLAIILRQRAPLLTVIAIFLLFYTFYNANHPRGFSTAVYIQNSNEVFALVMVAMAQTVPVLLGGLDLSVGAVMT
LVNTLASHLLSGSPLQIAFGFLICLATGALCGFVNGCVVVYGRIQPIIATLATGAIFMGLALFLRPSPGGDVDGDLAWAM
TNDLYEIAATYGFFDGGEAAWFAPISWIPVPAILMVAVTVFVWLPFARSVTGRTVYAIGSGESAAYMSGLNIDRAKIAAF
TLGGFFAGIGGIYLTLQTSSGNADIPQAGAYTLNSIAAVVIGGTSLLGGVGTAIGSIFGALVLRTISFNFRIFEIDPLLQ
PLFEGVVLLGAVSIGALGVLRIKNKLELFR

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=278, Percent_Identity=32.0143884892086, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1790524, Length=305, Percent_Identity=27.2131147540984, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI145693152, Length=219, Percent_Identity=32.4200913242009, Blast_Score=88, Evalue=9e-19,
Organism=Escherichia coli, GI1788896, Length=322, Percent_Identity=28.8819875776398, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1789992, Length=126, Percent_Identity=38.0952380952381, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI87082395, Length=298, Percent_Identity=28.5234899328859, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI145693214, Length=271, Percent_Identity=30.6273062730627, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI1787794, Length=288, Percent_Identity=24.6527777777778, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1788471, Length=303, Percent_Identity=27.7227722772277, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 36849; Mature: 36718

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPTRTSDLAIILRQRAPLLTVIAIFLLFYTFYNANHPRGFSTAVYIQNSNEVFALVMVA
CCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHH
MAQTVPVLLGGLDLSVGAVMTLVNTLASHLLSGSPLQIAFGFLICLATGALCGFVNGCVV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEE
VYGRIQPIIATLATGAIFMGLALFLRPSPGGDVDGDLAWAMTNDLYEIAATYGFFDGGEA
EEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCE
AWFAPISWIPVPAILMVAVTVFVWLPFARSVTGRTVYAIGSGESAAYMSGLNIDRAKIAA
EEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCCCHHHHHH
FTLGGFFAGIGGIYLTLQTSSGNADIPQAGAYTLNSIAAVVIGGTSLLGGVGTAIGSIFG
HHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHEEEECCHHHHHHHHHHHHHHHH
ALVLRTISFNFRIFEIDPLLQPLFEGVVLLGAVSIGALGVLRIKNKLELFR
HHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TPTRTSDLAIILRQRAPLLTVIAIFLLFYTFYNANHPRGFSTAVYIQNSNEVFALVMVA
CCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHH
MAQTVPVLLGGLDLSVGAVMTLVNTLASHLLSGSPLQIAFGFLICLATGALCGFVNGCVV
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEE
VYGRIQPIIATLATGAIFMGLALFLRPSPGGDVDGDLAWAMTNDLYEIAATYGFFDGGEA
EEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHHHHHHHCCCCCCCE
AWFAPISWIPVPAILMVAVTVFVWLPFARSVTGRTVYAIGSGESAAYMSGLNIDRAKIAA
EEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCCCHHHHHH
FTLGGFFAGIGGIYLTLQTSSGNADIPQAGAYTLNSIAAVVIGGTSLLGGVGTAIGSIFG
HHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHEEEECCHHHHHHHHHHHHHHHH
ALVLRTISFNFRIFEIDPLLQPLFEGVVLLGAVSIGALGVLRIKNKLELFR
HHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]