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The map label for this gene is rbsC [H]

Identifier: 110678215

GI number: 110678215

Start: 842594

End: 843574

Strand: Direct

Name: rbsC [H]

Synonym: RD1_0867

Alternate gene names: 110678215

Gene position: 842594-843574 (Clockwise)

Preceding gene: 110678214

Following gene: 110678216

Centisome position: 20.39

GC content: 59.94

Gene sequence:

>981_bases
ATGGCAATCACTGACAACACTTCACAAGAAAAGAGCCGCTGGCTCTCGCCTGAAAACAAACCGATTGCGATTGCTTCGGG
CTTCATTGTTGTGATCCTCGCCATCGGGACAAGCTACACGCTTGTAACACAAGGCACCGCGACGCTGTTGTCGCCGACCT
ATCTACTGCAACAGTTGCAGGTGGGTTCGTTTCTGGGGATCGTGGCGGCTGGTATGATGCTGGTCATTCTGCTGGGGCAC
ATTGACCTCTCCGTCCCTTGGACGGTGGCGGCCGCTGCCATGATGGCCACGGCGGTGGGCGGGCCGGCCGCCTTGCCCGT
GGGGTTAAGCGTCGGGCTGGCCGTCGGGCTGGTCAATGGCCTCGGGGTTGCCTACCTGCGCATTCCATCGATGATATTCA
CCCTTGGCGTCAACGCGGTGATGCGGGGCCTGATGGTGGCCTATACCGGTGGTTTTGCCCCCCAGACAGCAGCGACACCG
CTTATGCAGTATCTTGCCGTGGGCAAATTCCTTGGCATACCGGTTGCGTTGTTCGTCTGGGCGGTGGTGTCTGTGGGTAT
CGTCTTTATCCTGCGCAAGACAGCGACCGGGCGTTACATCTTTGCCATCGGCAACCGTGAATCCGCGGCCTATCTGGCGG
GCGCACCGACGCGCGGTGTGATCGTGATCGCGTTTGCTCTGTGCGGTATGATGTCGGGCCTCGCAGGCACCTTGCTCGCG
GGATATTCCACCAAGGCGTATCAGGGGATGGGGGATGCGTTCTTGCTGCCCGCCATCGCGGCGGTCGTGATCGGTGGAAC
GCATATTCTGGGGGGCAAGGGGCGCTATCTGGGCACGCTTGTTGGTGTCATCCTGATCGTGCTGCTCAATTCCGTTCTGT
CGATCATGCAGATGCCCGAAGCGGGGCGGCAGGTGATCTACGGCGCGGTCATTATCCTGATGCTTCTGTTTTACGACCGC
GGCGCGCAGGAAAGACAATAA

Upstream 100 bases:

>100_bases
GCCTTTGTTCGAGGGCGTGGTCCTGCTGGGGGCCGTCAGTATCGGGGCCCTTGGGGTCTTGCGCATCAAGAACAAGTTAG
AGCTTTTCCGGTAGGTCCCC

Downstream 100 bases:

>100_bases
GAAGGAACACATCATGCTGATGCCAGAATTCGAGGTGATCGATCCACGTTTCAAACGCTATGTGATGCCAAATGTGCATA
TGGAAACGCTCTATACCGGG

Product: ribose ABC transporter, permease protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 326; Mature: 325

Protein sequence:

>326_residues
MAITDNTSQEKSRWLSPENKPIAIASGFIVVILAIGTSYTLVTQGTATLLSPTYLLQQLQVGSFLGIVAAGMMLVILLGH
IDLSVPWTVAAAAMMATAVGGPAALPVGLSVGLAVGLVNGLGVAYLRIPSMIFTLGVNAVMRGLMVAYTGGFAPQTAATP
LMQYLAVGKFLGIPVALFVWAVVSVGIVFILRKTATGRYIFAIGNRESAAYLAGAPTRGVIVIAFALCGMMSGLAGTLLA
GYSTKAYQGMGDAFLLPAIAAVVIGGTHILGGKGRYLGTLVGVILIVLLNSVLSIMQMPEAGRQVIYGAVIILMLLFYDR
GAQERQ

Sequences:

>Translated_326_residues
MAITDNTSQEKSRWLSPENKPIAIASGFIVVILAIGTSYTLVTQGTATLLSPTYLLQQLQVGSFLGIVAAGMMLVILLGH
IDLSVPWTVAAAAMMATAVGGPAALPVGLSVGLAVGLVNGLGVAYLRIPSMIFTLGVNAVMRGLMVAYTGGFAPQTAATP
LMQYLAVGKFLGIPVALFVWAVVSVGIVFILRKTATGRYIFAIGNRESAAYLAGAPTRGVIVIAFALCGMMSGLAGTLLA
GYSTKAYQGMGDAFLLPAIAAVVIGGTHILGGKGRYLGTLVGVILIVLLNSVLSIMQMPEAGRQVIYGAVIILMLLFYDR
GAQERQ
>Mature_325_residues
AITDNTSQEKSRWLSPENKPIAIASGFIVVILAIGTSYTLVTQGTATLLSPTYLLQQLQVGSFLGIVAAGMMLVILLGHI
DLSVPWTVAAAAMMATAVGGPAALPVGLSVGLAVGLVNGLGVAYLRIPSMIFTLGVNAVMRGLMVAYTGGFAPQTAATPL
MQYLAVGKFLGIPVALFVWAVVSVGIVFILRKTATGRYIFAIGNRESAAYLAGAPTRGVIVIAFALCGMMSGLAGTLLAG
YSTKAYQGMGDAFLLPAIAAVVIGGTHILGGKGRYLGTLVGVILIVLLNSVLSIMQMPEAGRQVIYGAVIILMLLFYDRG
AQERQ

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=287, Percent_Identity=35.191637630662, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1788896, Length=314, Percent_Identity=30.5732484076433, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI145693152, Length=280, Percent_Identity=28.9285714285714, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790524, Length=318, Percent_Identity=28.3018867924528, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082395, Length=246, Percent_Identity=34.9593495934959, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787793, Length=267, Percent_Identity=31.8352059925094, Blast_Score=81, Evalue=7e-17,
Organism=Escherichia coli, GI1787794, Length=279, Percent_Identity=28.673835125448, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1789992, Length=141, Percent_Identity=33.3333333333333, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI145693214, Length=273, Percent_Identity=31.5018315018315, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33781; Mature: 33650

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAITDNTSQEKSRWLSPENKPIAIASGFIVVILAIGTSYTLVTQGTATLLSPTYLLQQLQ
CCCCCCCCHHHHHCCCCCCCCEEEECCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHH
VGSFLGIVAAGMMLVILLGHIDLSVPWTVAAAAMMATAVGGPAALPVGLSVGLAVGLVNG
HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
LGVAYLRIPSMIFTLGVNAVMRGLMVAYTGGFAPQTAATPLMQYLAVGKFLGIPVALFVW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
AVVSVGIVFILRKTATGRYIFAIGNRESAAYLAGAPTRGVIVIAFALCGMMSGLAGTLLA
HHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHH
GYSTKAYQGMGDAFLLPAIAAVVIGGTHILGGKGRYLGTLVGVILIVLLNSVLSIMQMPE
CCCCHHHHCCCCHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCH
AGRQVIYGAVIILMLLFYDRGAQERQ
HHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
AITDNTSQEKSRWLSPENKPIAIASGFIVVILAIGTSYTLVTQGTATLLSPTYLLQQLQ
CCCCCCCHHHHHCCCCCCCCEEEECCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHH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HHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]