Definition Roseobacter denitrificans OCh 114, complete genome.
Accession NC_008209
Length 4,133,097

Click here to switch to the map view.

The map label for this gene is 110678203

Identifier: 110678203

GI number: 110678203

Start: 829624

End: 830187

Strand: Direct

Name: 110678203

Synonym: RD1_0851

Alternate gene names: NA

Gene position: 829624-830187 (Clockwise)

Preceding gene: 110678202

Following gene: 110678205

Centisome position: 20.07

GC content: 59.04

Gene sequence:

>564_bases
ATGACCAATATCAAGAAAGTTGCCCCCATCCCGCGCGGATATCGTTCACTGACACCGCATATCACAACCGCTGACGTGCA
ATACACCATTGACCTGTACACAGCAGCGCTTGGCGCTGAGGTTGTGGAAACGGAAACGGTTCCTGACAGTGACGTACTGG
TCGGTGCTGTTGTCAAGATTGGCAACTCGACGCTGAGCATATCCTTGGGGACTGCCTACGGGGCGGGGGTTCTGAGCTTG
CATCACTATGTCGAAGACATCGACGCGAGCTGGGATGCTGCCATCGCTACCGGATTTGTTCCCCTGCGCGCCATCGAAGA
GACCTATTGGGGCGACCGCAGCGGTCTTCTTGTTGACCCGATGGGAATCCAGTGGAGCCTTGGCCAGCGCGTATTGCGTC
TGACCGCCGAGGAGCGTGACGCCCGTGCACGCGCGGCCTATGGAATCGCGCCTGAAGTGTCATACGATGCCGCAGAAGCA
GAGCATGGTGCGCAGGACTTCGCAACTGCCGAGGTTATCCCCGCAGCGGAACCTGCGGCACAGGGTGGCGAGGCGTTGCA
CTAA

Upstream 100 bases:

>100_bases
GACTTAAAAAGATCGGTCACAGACCGGCAAGCGAAACAGGGAAAGCCCATAAATTGTTTAACGGCTGTCCAAGATGGCCA
GATCATAAGGGAAAGACCAA

Downstream 100 bases:

>100_bases
GCTTGTACGCCTGACCCGCAGCGTTTCGCGTTTCCCCTTGGGCAACTCGCAGTCGGGCGTGTCAATCGCCCAACTCATCG
AGGCGTGTTGTCAGGAAACG

Product: glyoxalase family protein, putative

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MTNIKKVAPIPRGYRSLTPHITTADVQYTIDLYTAALGAEVVETETVPDSDVLVGAVVKIGNSTLSISLGTAYGAGVLSL
HHYVEDIDASWDAAIATGFVPLRAIEETYWGDRSGLLVDPMGIQWSLGQRVLRLTAEERDARARAAYGIAPEVSYDAAEA
EHGAQDFATAEVIPAAEPAAQGGEALH

Sequences:

>Translated_187_residues
MTNIKKVAPIPRGYRSLTPHITTADVQYTIDLYTAALGAEVVETETVPDSDVLVGAVVKIGNSTLSISLGTAYGAGVLSL
HHYVEDIDASWDAAIATGFVPLRAIEETYWGDRSGLLVDPMGIQWSLGQRVLRLTAEERDARARAAYGIAPEVSYDAAEA
EHGAQDFATAEVIPAAEPAAQGGEALH
>Mature_186_residues
TNIKKVAPIPRGYRSLTPHITTADVQYTIDLYTAALGAEVVETETVPDSDVLVGAVVKIGNSTLSISLGTAYGAGVLSLH
HYVEDIDASWDAAIATGFVPLRAIEETYWGDRSGLLVDPMGIQWSLGQRVLRLTAEERDARARAAYGIAPEVSYDAAEAE
HGAQDFATAEVIPAAEPAAQGGEALH

Specific function: Unknown

COG id: COG2764

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004360 [H]

Pfam domain/function: PF00903 Glyoxalase [H]

EC number: NA

Molecular weight: Translated: 19819; Mature: 19688

Theoretical pI: Translated: 4.30; Mature: 4.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNIKKVAPIPRGYRSLTPHITTADVQYTIDLYTAALGAEVVETETVPDSDVLVGAVVKI
CCCCCCCCCCCCCCHHCCCCEEECCEEEEHHHHHHHHCCHHHCCCCCCCCCHHHHHHHEE
GNSTLSISLGTAYGAGVLSLHHYVEDIDASWDAAIATGFVPLRAIEETYWGDRSGLLVDP
CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHCCCCCCEEECC
MGIQWSLGQRVLRLTAEERDARARAAYGIAPEVSYDAAEAEHGAQDFATAEVIPAAEPAA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCC
QGGEALH
CCCCCCC
>Mature Secondary Structure 
TNIKKVAPIPRGYRSLTPHITTADVQYTIDLYTAALGAEVVETETVPDSDVLVGAVVKI
CCCCCCCCCCCCCHHCCCCEEECCEEEEHHHHHHHHCCHHHCCCCCCCCCHHHHHHHEE
GNSTLSISLGTAYGAGVLSLHHYVEDIDASWDAAIATGFVPLRAIEETYWGDRSGLLVDP
CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHCCCCCCEEECC
MGIQWSLGQRVLRLTAEERDARARAAYGIAPEVSYDAAEAEHGAQDFATAEVIPAAEPAA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCC
QGGEALH
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]